Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N03
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    30   0.25 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   5.5  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   5.5  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   7.2  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   7.2  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   9.5  

>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +1

Query: 193 NRIVTILLFIAVNIFEPFGPPSDYVIKFSTRXYQWPLVVCVLLHCSQNLNDRCSHRI*VE 372
           NR  T  +F    +         ++++F +  Y  P+ +C+L   S+N N +    I + 
Sbjct: 13  NRFSTPFVFFFKKLNNTLKKSLQFIMRFHS--YH-PMFICLLRDSSRNENRKKKVSIGLR 69

Query: 373 ISMRRFVLLLVGATCNFLY 429
             MR F  L+  ATC   Y
Sbjct: 70  TIMRAFSFLMQVATCLIRY 88


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 122 NILWHIKFCITINIHHPSSIHHLQIE**PYYS 217
           NI    K+CI  N+  PS++ H + E   YYS
Sbjct: 440 NICTFAKWCINNNLDEPSNLKHFR-EMLDYYS 470


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -3

Query: 493 SGWVHVSVPTHAYNRKALRIAGIGNYKWHQPTAEQIDALKSLLRCGVNNGHLDSDY 326
           SGW + +  T+AY        GI ++     TA+    ++ ++  G   G  D  +
Sbjct: 519 SGWSNTNYDTYAYWHATNGQTGIASFSMGSLTADTYVPVRFVVANGAGKGGFDFSF 574


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 140 KFCITINIHHPSSIHHLQI 196
           +FCI+ ++ HP+ IH L +
Sbjct: 405 EFCISSSLRHPNVIHTLDL 423


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 210 ITLYSCQHFRAIRATF*LCYKVFDQGLSVAISC 308
           I +Y+ +      AT   CY +FD+ L+  I+C
Sbjct: 533 IPVYTDETGEVDNATLEACYSIFDRDLNGDITC 565


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 193 NRIVTILLFIAVNIFEPFGPPSDYVIKFSTRXYQWPLVVCVLLHCSQN 336
           N  +   +F+A+   E +    + V+K   +  Q P +  V+LHC  N
Sbjct: 563 NSTLRTSIFVALVGSEDYIDAWERVLKLHLKRNQLPEIAYVILHCVGN 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,533
Number of Sequences: 5004
Number of extensions: 40082
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)