Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N03
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    31   0.59 
06_03_0846 - 25328224-25330613,25330716-25330794                       27   7.3  
11_01_0535 + 4234282-4235082                                           27   9.7  

>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
 Frame = -3

Query: 523 IGGNAKVYEGSGWVHVSVPTHAYNRKALRIAGIGNYKWHQPTAEQIDA---LKSLLRCGV 353
           IGG  +++ G  W   S    AY   +  IA  G   W+ P+ +Q  +     S++ C  
Sbjct: 395 IGGTGRIWLGRAWRPYSTVVFAYTSMSDIIASEGWNDWNDPSRDQYASSLYSVSIVTCMT 454

Query: 352 NNGHLDSDYNVVGHRQLMATDXPWSKTL 269
                  +Y   G    ++   P+++ L
Sbjct: 455 KRTVFYGEYRCTGDGANLSDRVPYAQKL 482


>06_03_0846 - 25328224-25330613,25330716-25330794
          Length = 822

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 264 IIRRWPEWLENVDSYKE 214
           II+RW  W   VD++KE
Sbjct: 640 IIQRWMRWFSEVDNFKE 656


>11_01_0535 + 4234282-4235082
          Length = 266

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 401 WLVPLVISYTRDSKSFPVVRVS 466
           WL PLV+S T  S S P +RV+
Sbjct: 64  WLPPLVLSATTTSLSTPTLRVT 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,703,869
Number of Sequences: 37544
Number of extensions: 255369
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)