Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N03
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z69794-4|CAA93678.3|  654|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    27   8.7  

>Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical
           protein T16G1.1 protein.
          Length = 695

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 389 LFCCWLVPLVISYTRDSKSFPVVRVSGHANVH-PTGSFIY 505
           +F CWL    +S T  +K F  +       +H P+G+ +Y
Sbjct: 4   IFLCWLAIATVSQTVSAKKFMKIFADAGIGIHCPSGNKVY 43


>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 379 LKSLLRCGVNNGHLDSDYNVVGHRQ 305
           ++ LL C ++N H+  DY ++ H Q
Sbjct: 337 IEELLACELHNVHIHEDYRLILHEQ 361


>Z69794-4|CAA93678.3|  654|Caenorhabditis elegans Hypothetical
           protein R03G8.3 protein.
          Length = 654

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 297 PLIXPGRKLYNIIRRWPEWLEN 232
           PLI PG K Y+ IR  P+ L N
Sbjct: 490 PLIIPGEKGYSYIRTQPDILRN 511


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical protein
            F01G4.3 protein.
          Length = 1266

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 421  NYKWHQPTAEQIDALKSLLRCGVNNG 344
            +YK+HQ +  ++ AL S L C  N+G
Sbjct: 1116 DYKFHQRSPAELAALLSTLTCQYNSG 1141


>Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical
           protein C43C3.3 protein.
          Length = 446

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 410 PLVISYTRDSKSFPVVRVSGHANVHPTGS 496
           P V+    + KS PVV V GH   HP G+
Sbjct: 50  PEVMRMISNPKSQPVVYVYGHKTRHPCGT 78


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 379 LKSLLRCGVNNGHLDSDYNVVGHRQ 305
           ++ LL C ++N H+  DY ++ H Q
Sbjct: 339 IEELLACELHNVHIHEDYRLILHEQ 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,294,012
Number of Sequences: 27780
Number of extensions: 233665
Number of successful extensions: 414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)