Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N03
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   8.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 271 KFSTRXYQWPLVVCVLLHCSQNLN 342
           KF+   Y+  L+VC +  C+  L+
Sbjct: 306 KFNNNVYKDALIVCTVNSCTSMLS 329


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 271 KFSTRXYQWPLVVCVLLHCSQNLN 342
           KF+   Y+  L+VC +  C+  L+
Sbjct: 359 KFNNNVYKDALIVCTVNSCTSMLS 382


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 193 NRIVTILLFIAVNIF 237
           +RIV  L F+A+N+F
Sbjct: 427 SRIVFPLFFLAINVF 441


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 271 KFSTRXYQWPLVVCVLLHCSQN 336
           K + R  ++  V+C  ++CS+N
Sbjct: 28  KHAERQEEYRCVICERVYCSRN 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,170
Number of Sequences: 438
Number of extensions: 3304
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)