Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N03
         (543 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41170.1 68415.m05085 F-box family protein contains Pfam PF00...    27   6.1  
At5g39940.1 68418.m04843 expressed protein                             27   8.1  

>At2g41170.1 68415.m05085 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 371

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 358 GVNNGHLDSDYNVVGHRQLMATDXPWSKTL 269
           GV N   DSD NVV   +    + PW +T+
Sbjct: 300 GVQNCRCDSDENVVMEFRQFRPESPWRRTV 329


>At5g39940.1 68418.m04843 expressed protein
          Length = 480

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 364 RCGVNNGHLDSDYNVVGH 311
           RC V NGH +   N+ GH
Sbjct: 91  RCNVTNGHCNDTINLAGH 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,353,040
Number of Sequences: 28952
Number of extensions: 206212
Number of successful extensions: 389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)