Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N01
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 229 2e-61
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 124 1e-29
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 84 2e-17
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 29 0.35
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 27 1.4
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 27 1.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.9
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 26 3.3
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa... 25 5.7
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 25 7.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 7.5
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 25 10.0
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 229 bits (561), Expect = 2e-61
Identities = 114/179 (63%), Positives = 138/179 (77%), Gaps = 4/179 (2%)
Frame = +2
Query: 26 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLT 205
MG++SKDKRD YYRLAKE+GWRARSAFKLLQ+NE++N+F+ R VDLCAAPGSWSQVL+
Sbjct: 1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS 60
Query: 206 KTLRQNAENV----EDVKIVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLKADL 373
+ L +N + E IVAVDLQ MA + GV +Q DIT +T I+ F ADL
Sbjct: 61 RELLKNIDTSIAADEKPMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADL 120
Query: 374 VVCDGAPDVTGLHDIDEYVQSQLLLAALHITTHVLKIGGVFVAKIFRGKDVSLLYSQLK 550
VV DGAPDVTGLHD+DEY+Q+Q+LLAA ++ VLK GG FVAKIFRG+DVSLLYSQL+
Sbjct: 121 VVSDGAPDVTGLHDLDEYIQAQILLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQLR 179
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 124 bits (298), Expect = 1e-29
Identities = 67/174 (38%), Positives = 100/174 (57%)
Frame = +2
Query: 32 KTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLTKT 211
KT+K + D +Y+LAKE+G+R+R+AFKL+Q+N++Y+ + +DLCAAPG W QV +KT
Sbjct: 7 KTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVASKT 66
Query: 212 LRQNAENVEDVKIVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLKADLVVCDGA 391
+ + IV VDL + +P DIT + + KAD+V+ DGA
Sbjct: 67 CKPGS------LIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKADVVLHDGA 120
Query: 392 PDVTGLHDIDEYVQSQLLLAALHITTHVLKIGGVFVAKIFRGKDVSLLYSQLKQ 553
P+V D Y Q+QL+L ++ + L GG FV K+FR +D + L KQ
Sbjct: 121 PNVGSAWLQDAYGQAQLVLMSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQ 174
>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 83.8 bits (198), Expect = 2e-17
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 12/183 (6%)
Frame = +2
Query: 38 SKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLTKTLR 217
+K +D Y + +K + +R+R+A+KL+++N +Y + +D+ APGSWSQV K +
Sbjct: 12 AKRSKDFYRKKSKIDNFRSRAAYKLIELNSKYRFINKEDVVIDVGFAPGSWSQVAKKLVG 71
Query: 218 QNAENVEDVKIVAVDLQAMAALPGVKQIQGDI------TKLSTACSIIKE------FEGL 361
K++ +D+Q +A GV I GDI TKL A ++ E +
Sbjct: 72 NKG------KVIGIDIQHIAPPEGVLPIYGDIRDPNTLTKLFEALRLLHEPNTNDSIDCR 125
Query: 362 KADLVVCDGAPDVTGLHDIDEYVQSQLLLAALHITTHVLKIGGVFVAKIFRGKDVSLLYS 541
D V+ D TG+ D + +L +ALH+ LK G F+ K + G + + L +
Sbjct: 126 VVDAVISDMLHKATGIRIRDHALSMELCASALHVALTFLKSNGSFICKFYMGDEDADLQN 185
Query: 542 QLK 550
LK
Sbjct: 186 LLK 188
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 29.5 bits (63), Expect = 0.35
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +2
Query: 116 QINEEYNIFDNVLRAVDLCAAPGSWSQVLTKTLRQNAENVEDVKIVAVDLQAMAALPGVK 295
+IN+E+ +F VDL APG WS + + + +++A D+
Sbjct: 65 KINKEHQLFKPGQIVVDLGCAPGIWSTIAARHVGLFG------RVIACDIIPCRLPENSS 118
Query: 296 QIQGDITKLSTACSIIK 346
IQG+I + I K
Sbjct: 119 MIQGNILSMEIQLEIAK 135
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 381 HTTRSAFRPSNSFIIEHAVDSFVISPCICLTPG 283
H FRP + F + D+ ++ +CL+PG
Sbjct: 399 HQVGRRFRPGSDFTLATTNDTALLEATLCLSPG 431
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 458 HITTHVLKIGGVFVAKIFRGKDVSLLYSQLK 550
HIT +I G++VA I+ K V +L QLK
Sbjct: 149 HITKFSCEIFGLYVAFIYLEKGVQVLCDQLK 179
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 1.9
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = -1
Query: 423 SSMSCSPVTSGAPSHTTRSAFRPSNSFIIEHAVDSFVISPCICLTPGNAAIACKSTATIL 244
SS S S +S + S ++ S+ RPS+S + S + +TP +++ ST++ +
Sbjct: 212 SSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSS---SSTSSEV 268
Query: 243 TSST 232
SST
Sbjct: 269 PSST 272
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 1.9
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = -1
Query: 456 NAANRSCDCTYSSMSCSPVTSGAPSHTTRSAFRPSNSFIIEHAVDSFVISPCICLTPGNA 277
++++ S + SS S S +S +PS + S+ S+SFI S S I A
Sbjct: 189 SSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNAKTA 248
Query: 276 AIACKSTATILTSSTFS 226
+ S+A+ TSS S
Sbjct: 249 STDDSSSASSATSSVSS 265
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 389 APDVTGLHDIDEYVQSQLLLAALH 460
A D T +H++DEY++ Q L +H
Sbjct: 466 AADETRVHNVDEYIEQQDLDELIH 489
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 161 VDLCAAPGSWSQVLTKTLRQNAENVEDVKIVAVDLQAMAAL 283
+D+CAAPGS + L + + + A N++D + +L+++ L
Sbjct: 164 LDMCAAPGSKTAQLIEAVYKKA-NIKDAAHDSKNLKSVEGL 203
>SPAC31G5.18c |||ubiquitin family, human C1ORF55
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 21 EKWVKLQKINEIFTID*LKKKVGEHEVLSNCYKSMKSI 134
+K K QK+N++ D + +HE L + +S+ ++
Sbjct: 143 KKEAKKQKLNKVLAADSSSSRFDDHEYLEDLEQSVSNV 180
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 107 KLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLTKTLRQN 223
K L++N+ YNI + +D PGS + + +TL+ N
Sbjct: 255 KRLKLNQPYNIMGITVYVLDANHCPGS-AMFVFETLQSN 292
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 7.5
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = -1
Query: 453 AANRSCDCTYSSMSCSPVTSGAPSHTTRSAFRPSNSFIIEHAVDSFVISPCICLTPGNAA 274
A+N + + +S S + TS + ++ S+ SNS S + S ++
Sbjct: 186 ASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSI 245
Query: 273 IACKSTATILTSS 235
+ S++T LTSS
Sbjct: 246 SSTVSSSTPLTSS 258
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 155 RAVDLCAAPGSWSQVLTKTLRQNAENVEDV 244
+ +D+CAAPGS + L + L + + ED+
Sbjct: 146 KVLDMCAAPGSKTAQLLEALHKPTKK-EDI 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,568
Number of Sequences: 5004
Number of extensions: 40206
Number of successful extensions: 136
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -