Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N01
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667... 255 2e-68
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 107 8e-24
01_04_0008 + 15041682-15041909,15042035-15042319,15042406-150427... 38 0.007
03_06_0493 + 34315867-34316124,34316194-34316256,34317346-343176... 29 0.029
03_02_0996 - 13082540-13082818,13083107-13083221,13084135-130842... 34 0.088
07_03_1138 - 24240155-24240219,24240427-24240559,24240640-242411... 33 0.20
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 30 1.1
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 4.4
01_06_1561 - 38255397-38255595,38255712-38255867,38256040-38257163 28 5.8
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 27 7.7
>06_03_1314 +
29266320-29266346,29266463-29266556,29266663-29266712,
29266798-29266847,29266945-29267053,29267135-29267195,
29267291-29267343,29267629-29267721,29268091-29268166,
29268401-29268508,29268596-29268840
Length = 321
Score = 255 bits (625), Expect = 2e-68
Identities = 127/179 (70%), Positives = 143/179 (79%), Gaps = 6/179 (3%)
Frame = +2
Query: 26 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLT 205
MGK SKDKRDIYYR AKEEGWRARSAFKLLQI++E+NIF V R VDLCAAPGSWSQVL+
Sbjct: 1 MGKASKDKRDIYYRKAKEEGWRARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWSQVLS 60
Query: 206 KTLRQNAENVEDVK------IVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLKA 367
+ L A+ D K IVA+DLQ MA + GV Q+QGDIT TA +I+ F+G KA
Sbjct: 61 RNLYVPAKQSPDCKEGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 368 DLVVCDGAPDVTGLHDIDEYVQSQLLLAALHITTHVLKIGGVFVAKIFRGKDVSLLYSQ 544
DLVVCDGAPDVTGLHD+DE+VQSQL+LAAL I THVLK+GG FVAKIFRGKD SLLY Q
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVAKIFRGKDTSLLYCQ 179
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 107 bits (256), Expect = 8e-24
Identities = 65/180 (36%), Positives = 97/180 (53%), Gaps = 4/180 (2%)
Frame = +2
Query: 26 MGKTS-KDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVL 202
MGKT K ++D +Y LAKE+G+R+R+AFKLLQ++ + +DLCAAPG W QV
Sbjct: 1 MGKTKGKQRQDKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVA 60
Query: 203 TKTLRQNAENVEDVKIVAVDLQAMAALPGVKQIQGDI--TKLSTACSIIKEFEGLKA-DL 373
A +V VDL + + G + DI TK A + + G+ A D+
Sbjct: 61 VNHAPVGA------FVVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVAAFDV 114
Query: 374 VVCDGAPDVTGLHDIDEYVQSQLLLAALHITTHVLKIGGVFVAKIFRGKDVSLLYSQLKQ 553
V+ DG+P+V G + QS L++ A+ + T L G F+ K+FR +D + + LKQ
Sbjct: 115 VLHDGSPNVGGAWAQEATAQSSLVIDAVRLATMFLAPKGAFITKVFRSQDYNAIMYCLKQ 174
>01_04_0008 +
15041682-15041909,15042035-15042319,15042406-15042723,
15044087-15044128,15045111-15045391,15045808-15045883,
15046196-15046296,15047971-15048088,15048872-15049186
Length = 587
Score = 37.5 bits (83), Expect = 0.007
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Frame = +2
Query: 83 GWRARSAFKLLQINE-EYNIFDNVLRAVDLCAAPGSWSQVLTKTLRQNAENVEDVKIVAV 259
GW R A ++N+ + NV RA D S V K +R + E VK +A
Sbjct: 62 GWTPRRADTFEKLNKIGSGTYSNVYRARDTV----SGRIVALKKVRFDNLEPESVKFMAR 117
Query: 260 DLQAMAAL--PGVKQIQGDITKLSTACSIIKEFEGLKADLVVCDGAPDVT-GLHDIDEYV 430
++ + L P V +++G +T +CS+ FE ++ DL +PDV L I YV
Sbjct: 118 EILILRKLDHPNVIKLEGLVTS-RMSCSLYLVFEYMEHDLAGLAASPDVKFTLPQIKCYV 176
Query: 431 QSQLLLAALH 460
Q QLL H
Sbjct: 177 Q-QLLSGLEH 185
>03_06_0493 +
34315867-34316124,34316194-34316256,34317346-34317604,
34317710-34317819
Length = 229
Score = 28.7 bits (61), Expect(2) = 0.029
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 107 KLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLTKTL 214
+L+QI +++ + +DL APG+W QV + L
Sbjct: 57 QLIQIQKQHKLIAPGAAVLDLGCAPGAWLQVACQNL 92
Score = 25.8 bits (54), Expect(2) = 0.029
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 53 DIYYRLAKEEGWRARSAFKL 112
D +YR A+ G+ ARSAFK+
Sbjct: 9 DFFYREAQRLGYVARSAFKV 28
>03_02_0996 -
13082540-13082818,13083107-13083221,13084135-13084235,
13084890-13085117,13085789-13086106,13086200-13086484,
13086566-13086913
Length = 557
Score = 33.9 bits (74), Expect = 0.088
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Frame = +2
Query: 80 EGWRARSAFKLLQINE-EYNIFDNVLRAVDLCAAPGSWSQVLTKTLRQNAENVEDVKIVA 256
+GW R A +I++ + NV +A D A G V K +R + E V+ +A
Sbjct: 101 DGWTPRRADSFEKIDKIGQGTYSNVYKARD--TATGKI--VALKKVRFDNLEPESVRFMA 156
Query: 257 VDLQAMAAL--PGVKQIQGDITKLSTACSIIKEFEGLKADLVVCDGAPDVTGLHDIDEYV 430
++ + L P V +++G +T +CS+ FE ++ DL +PD++ +
Sbjct: 157 REILILRRLHHPNVVKLEGLVTS-RMSCSLYLVFEYMEHDLAGLAASPDISFTEPQVKCY 215
Query: 431 QSQLLLAALH 460
QLL H
Sbjct: 216 MHQLLSGLEH 225
>07_03_1138 -
24240155-24240219,24240427-24240559,24240640-24241182,
24241306-24241411,24241630-24241727,24242289-24242516,
24242990-24243307,24243411-24243695,24243706-24243771,
24244337-24244738
Length = 747
Score = 32.7 bits (71), Expect = 0.20
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 197 VLTKTLRQNAENVEDVKIVAVDLQAMAAL--PGVKQIQGDITKLSTACSIIKEFEGLKAD 370
V K +R + E V+ +A ++Q + L P V +++G IT +CS+ FE ++ D
Sbjct: 177 VALKKVRFDNFEPESVRFMAREIQILRRLDHPNVMKLEGLITS-RLSCSLYLVFEYMEHD 235
Query: 371 LVVCDGAPDV 400
L +PD+
Sbjct: 236 LAGLSSSPDI 245
>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 233 VEDVKIVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLKADLVVC 382
+E K + L + +KQ++ D+ L C + + E LK DLVVC
Sbjct: 1038 IEQRKADLLQLHGPEEVKNMKQMRVDLEVLRLICERVVKREKLKKDLVVC 1087
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -1
Query: 462 ICNAANRSCDCTYSSMSCSPVTSGAPSHTTRSAFRPSNSFIIEHAVDSFVISPC--ICLT 289
+ + ++ +C+ SS + S PS S P +HA +S ISP + +
Sbjct: 1728 VVSESDEACETVISSQTAIRQESNIPSERKFSVSSPEKVMFPDHADESPFISPTTGLKVI 1787
Query: 288 PGNAAIACKST 256
PG + A ++T
Sbjct: 1788 PGYSTHAAQAT 1798
>01_06_1561 - 38255397-38255595,38255712-38255867,38256040-38257163
Length = 492
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 161 VDLCAAPGSWSQVLTKTLRQNAENVEDVKIVAVD--LQAMAALPGVKQIQGDITKLSTAC 334
+D GS L + L+ NA ++I VD + G+K I + KL+ C
Sbjct: 233 IDFDINQGSQYITLIQFLKNNANKPRHLRITGVDDPETVQRTVGGLKVIGQRLEKLAEDC 292
Query: 335 SIIKEFEGLKADL 373
I EF + A++
Sbjct: 293 GISFEFRAVGANI 305
>11_06_0557 - 24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 167 LCAAPGSWSQVLTKTLRQNAENVEDVKIVAVDLQAMA 277
L PG+W ++ +++QN V D K + +D++ ++
Sbjct: 939 LLQIPGTWKSLIHHSMQQNCVVVLDSKSLTMDMEPLS 975
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,110,609
Number of Sequences: 37544
Number of extensions: 244371
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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