Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N01
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52274| Best HMM Match : FtsJ (HMM E-Value=0) 277 4e-75
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25) 33 0.21
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 1.5
SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_5474| Best HMM Match : DUF1460 (HMM E-Value=4.5) 29 3.4
SB_30575| Best HMM Match : Pico_P2A (HMM E-Value=5.9) 28 4.5
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_53893| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_7619| Best HMM Match : ArfGap (HMM E-Value=5.3) 27 7.9
>SB_52274| Best HMM Match : FtsJ (HMM E-Value=0)
Length = 316
Score = 277 bits (679), Expect = 4e-75
Identities = 137/179 (76%), Positives = 152/179 (84%), Gaps = 2/179 (1%)
Frame = +2
Query: 26 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLT 205
MG++SKDKRDIYYRLAKEEGWRARSAFKLLQ+NE++++F V + VDLCAAPGSWSQVL+
Sbjct: 1 MGRSSKDKRDIYYRLAKEEGWRARSAFKLLQLNEDFDLFSGVSKVVDLCAAPGSWSQVLS 60
Query: 206 KTL--RQNAENVEDVKIVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLKADLVV 379
+ L + E E KIVAVDLQAMA LPGV QIQGDITK STA II FEG ADLV+
Sbjct: 61 RKLIEEKQDEEGEKPKIVAVDLQAMAPLPGVIQIQGDITKTSTANQIISHFEGEHADLVI 120
Query: 380 CDGAPDVTGLHDIDEYVQSQLLLAALHITTHVLKIGGVFVAKIFRGKDVSLLYSQLKQF 556
CDGAPDVTGLHDIDEY+Q QLLLAAL+ITTHVLK GG FVAKIFRGKDVSLLY+QLK F
Sbjct: 121 CDGAPDVTGLHDIDEYIQGQLLLAALNITTHVLKPGGNFVAKIFRGKDVSLLYAQLKVF 179
>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
Length = 941
Score = 32.7 bits (71), Expect = 0.21
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +2
Query: 305 GDITKLSTACSIIKEFEGLKADLVVCDGAPDVTGLHDIDEYVQSQLLLAALHITTHVLKI 484
GD+ +L + + +G K LV DG+ D + + E SQL+ VL
Sbjct: 213 GDLMQLENLNHLAEACQG-KVHLVTADGSIDCSDEPEEQENAVSQLIFCEAVTALTVLAT 271
Query: 485 GGVFVAKIF 511
GG +V K+F
Sbjct: 272 GGCYVFKMF 280
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 212 LRQNAE-NVEDVKIVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLKADLV 376
L QN+ +V V V A G K+I+G +TK S+ C I+ E G D V
Sbjct: 2281 LMQNSHAHVVKVTNFGVITHGYAVFEGGKKIEGPVTKASSKCMIMVEERGEGLDSV 2336
>SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1015
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = +2
Query: 254 AVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLKADLVVCDGAPDVTGLHDIDEYVQ 433
+ +++ M L K I+ DI +S C + K EG + P + D ++
Sbjct: 492 SANVRPMPKLSPPKSIETDIRPISLTCHLAKAMEGF----TLSRSLPGIVQHLDTKQFAV 547
Query: 434 S-----QLLLAALHITTHVLKIGGVFVAKIF 511
+ ++ LH+T L GGV+V F
Sbjct: 548 AGKSCQHAIVYLLHLTLEALDRGGVWVRWFF 578
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 426 YSSMSCSPVTSGAPSHTTRSAFRPSNSFIIEHAVDSFV 313
Y S + G SH +AF P +++ +VD F+
Sbjct: 201 YPSQMSKTIKFGTKSHPECAAFSPDGQYLVTGSVDGFI 238
>SB_5474| Best HMM Match : DUF1460 (HMM E-Value=4.5)
Length = 426
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +2
Query: 59 YYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLTKTLRQNAENVE 238
Y+ LA G + ++INE Y + +D A S++L TL A+ ++
Sbjct: 278 YFVLADPTGNSVVKELQTVEINEHYYYYYYYKLLIDTSAQKYPQSRILISTLLARADRLD 337
Query: 239 DV-KIVAVDLQAMAALPGVKQIQGD 310
+ K+ L+A P V I +
Sbjct: 338 EKRKLFNTQLRAFHVPPTVSFIDNE 362
>SB_30575| Best HMM Match : Pico_P2A (HMM E-Value=5.9)
Length = 564
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = -1
Query: 423 SSMSCSPVTSGAPSHTTRSAFRPSNSFIIEHAVDSFVISPCICLTPGNAAIACKSTATIL 244
SSM+C+ + +P H + + I+ VD F+++ C L +++ + + A +
Sbjct: 476 SSMNCTKSKTKSPVHASIHTISGVSEGIVSMLVDQFLLAECDYLIICDSSFSYSAVAMSM 535
Query: 243 TSSTFSAF 220
+ + AF
Sbjct: 536 RNKSAFAF 543
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -1
Query: 534 RRDTSFPLKILATNTPPILRT*VV-ICNAANRSCDCTYSSMSCSPVTSG 391
R D K + +N P + VV CN NR C + C+P +G
Sbjct: 755 RVDVESDTKAMDSNAPKVRNIIVVKTCNDCNRHATCVANECVCNPGYTG 803
>SB_53893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 764
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = +2
Query: 293 KQIQGDITKLSTACSIIKEFEGLKADLVVCDGAPDVTGLHDIDEYVQS-----QLLLAAL 457
K I+ DI +S C + K EG + P + D ++ + ++ L
Sbjct: 394 KSIETDIRPISLTCHLAKAMEGF----TLSRSLPGIVQHLDTKQFAVAGKSCQHAIVYLL 449
Query: 458 HITTHVLKIGGVFVAKIF 511
H+T L+ GGV+V F
Sbjct: 450 HLTLEALERGGVWVRWFF 467
>SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 456 NAANRSCDCTYSSMSCSPVTSGAPSHTTRSAFRPSNSFIIEHAVDSFVI 310
N+A+ S + T S S + V + PS + RPS SF+I A S +I
Sbjct: 438 NSASASDETTEESTSRNEVCTDTPSGPYKQDDRPSMSFVIYIAYLSSMI 486
>SB_7619| Best HMM Match : ArfGap (HMM E-Value=5.3)
Length = 483
Score = 27.5 bits (58), Expect = 7.9
Identities = 22/110 (20%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = +2
Query: 158 AVDLCAAPGSWSQVLTKTLRQNAENVED-VKIVAVDLQAMAALPGVKQIQGDITKLSTAC 334
A+D+C G+W + L + L+++ V+D V I V ++++ G++ I +++
Sbjct: 368 AIDICILLGAWDEAL-RLLKKSGVPVQDLVAIYCVLIRSVVEYAGLRY---SIRRITVTL 423
Query: 335 SIIKEFEGLKADLVVCDGAPDVTGLHDIDEYVQSQLLLAALHITTHVLKI 484
S + F K V + P + ++E + +++ ++ H++ +I
Sbjct: 424 SPRRAFGNYKNKYPVDEHNP-LRNPSPLNEPLHNKVFYSSSHVSAIARRI 472
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,658,050
Number of Sequences: 59808
Number of extensions: 305548
Number of successful extensions: 843
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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