Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_N01
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.39 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.52 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.4  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 378 TTRSAFRPSNSFIIEHAVDSFVISPCI 298
           +T+S   PSN F+I  A+ +F++  C+
Sbjct: 79  STKSLRTPSNLFVINLAISNFLMMFCM 105


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 378 TTRSAFRPSNSFIIEHAVDSFVISPCI 298
           +T+S   PSN F+I  A+  F++  C+
Sbjct: 45  STKSLRTPSNLFVINLAISDFLMMFCM 71


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 252 WLWICKQWQHCLVLNKYRV 308
           W+W    W    VLNK  V
Sbjct: 176 WIWTPHGWMRRNVLNKQHV 194


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 378 TTRSAFRPSNSFIIEHAVDSFVIS 307
           T++S   PSN FI+  A+   +++
Sbjct: 84  TSKSLRTPSNMFIVSLAIFDIIMA 107


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 378 TTRSAFRPSNSFIIEHAVDSFVIS 307
           T++S   PSN FI+  A+   +++
Sbjct: 84  TSKSLRTPSNMFIVSLAIFDIIMA 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,018
Number of Sequences: 438
Number of extensions: 2853
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)