Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_N01
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g01230.1 68418.m00029 FtsJ-like methyltransferase family prot... 255 2e-68
At5g01230.2 68418.m00030 FtsJ-like methyltransferase family prot... 107 4e-24
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot... 99 2e-21
At5g13830.1 68418.m01617 FtsJ-like methyltransferase family prot... 54 9e-08
At1g76620.1 68414.m08915 expressed protein contains Pfam profile... 29 1.6
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 29 2.8
At3g45650.1 68416.m04931 proton-dependent oligopeptide transport... 27 6.4
At3g26570.2 68416.m03317 phosphate transporter family protein co... 27 6.4
At3g26570.1 68416.m03316 phosphate transporter family protein co... 27 6.4
At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR... 27 6.4
At1g77170.1 68414.m08990 pentatricopeptide (PPR) repeat-containi... 27 6.4
>At5g01230.1 68418.m00029 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 309
Score = 255 bits (624), Expect = 2e-68
Identities = 126/183 (68%), Positives = 146/183 (79%), Gaps = 6/183 (3%)
Frame = +2
Query: 26 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLT 205
MGK S+DKRDIYYR AKEEGWRARSAFKLLQI+EE+NIF+ V R VDLCAAPGSWSQVL+
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 206 KTLRQNAENVEDVK------IVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLKA 367
+ L A++ + K IVA+DLQ MA + GV Q+QGDIT TA +I+ F+G KA
Sbjct: 61 RQLYLPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
Query: 368 DLVVCDGAPDVTGLHDIDEYVQSQLLLAALHITTHVLKIGGVFVAKIFRGKDVSLLYSQL 547
DLVVCDGAPDVTGLHD+DE+VQSQL+LA L I TH+LK GG F+AKIFRGKD SLLY QL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQL 180
Query: 548 KQF 556
K F
Sbjct: 181 KLF 183
>At5g01230.2 68418.m00030 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 61
Score = 107 bits (258), Expect = 4e-24
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = +2
Query: 26 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQ 196
MGK S+DKRDIYYR AKEEGWRARSAFKLLQI+EE+NIF+ V R VDLCAAPGSWSQ
Sbjct: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ 57
>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 821
Score = 98.7 bits (235), Expect = 2e-21
Identities = 60/176 (34%), Positives = 99/176 (56%), Gaps = 5/176 (2%)
Frame = +2
Query: 26 MGKTS-KDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVL 202
MGK K + D YYRLAKE G+R+R+++KLLQ++ +Y++ + +DLCAAPG W QV
Sbjct: 1 MGKVKGKHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVA 60
Query: 203 TKTLRQNAENVEDVKIVAVDLQAMAALPGVKQIQGDITKLSTACSI--IKEFEGLKA-DL 373
+ + + ++ +DL + + G + DIT+ I + E G+ A +L
Sbjct: 61 VEKVPVGS------LVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNL 114
Query: 374 VVCDGAPDVTGLHDIDEYVQSQLLLAALHITTHVLKIGGVFVAKIFRGKDV-SLLY 538
V+ DG+P+V G + Q+ L++ ++ + T L G V K+FR +D S+LY
Sbjct: 115 VLHDGSPNVGGAWAQEAMSQNALVIDSVRLATEFLARNGNLVTKVFRSRDYNSVLY 170
>At5g13830.1 68418.m01617 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 224
Score = 53.6 bits (123), Expect = 9e-08
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Frame = +2
Query: 53 DIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLTKT---LRQN 223
D +YR A+ G+ ARSAFKLLQI ++Y + +DL APG+W QV ++ LR
Sbjct: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLRSG 67
Query: 224 AENV-EDVKIVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEF--EGLKADLVVCDGAP 394
V D+K V V Q + V+ I D+ L+ I+E + L +++ D
Sbjct: 68 GIVVGMDIKKVKVPPQCDSR---VQTIAADV--LNFPRQKIRELSPQQLGFSVILSDMCH 122
Query: 395 DVTGLHDIDEYVQSQLLLAALHI 463
V+G+ D + ++L + AL +
Sbjct: 123 SVSGITTRDAALSAELGMRALDL 145
>At1g76620.1 68414.m08915 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 527
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 435 DCTYSSMSCSPVTSGAPSHTTRSAFRPSN--SFIIEHAVDS 319
+C YSS S S TS S ++ S++ P N S ++ VD+
Sbjct: 6 NCAYSSSSSSSSTSSPTSSSSSSSYSPRNRESMFLQSVVDA 46
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187; contains
Pfam profile PF02845: CUE domain
Length = 1973
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +2
Query: 56 IYYRLAKEEGWRARSAFKLLQINEEYNIFDNVL----RAVDLCAAPGSWSQVLTKTLRQN 223
+ YR++ A++A L Q + E + D L + +D+CA G + LTK+L +N
Sbjct: 1291 VLYRISSNRDPGAKAADSLSQKDHEVLLQDKKLLDLPKLLDICAIYGHENAELTKSLIEN 1350
Query: 224 A 226
A
Sbjct: 1351 A 1351
>At3g45650.1 68416.m04931 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 558
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 315 VISPCICLTPGNAAIACKSTATILTSSTFSAF 220
++S CIC+ P AAIA S + + SAF
Sbjct: 71 IVSGCICMVPAVAAIASDSFFGTIPVISVSAF 102
>At3g26570.2 68416.m03317 phosphate transporter family protein
contains Pfam profile: PF01384 phosphate transporter
family
Length = 587
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 434 SQLLLAALHITTHVLKIGGVFVAKIFRGKDVSLLYSQL 547
S LL H+T+ + K G+ +A +F+GKD+ LL++ L
Sbjct: 205 SGALLMGTHVTSTMQK--GILMANVFQGKDM-LLFAGL 239
>At3g26570.1 68416.m03316 phosphate transporter family protein
contains Pfam profile: PF01384 phosphate transporter
family
Length = 613
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 434 SQLLLAALHITTHVLKIGGVFVAKIFRGKDVSLLYSQL 547
S LL H+T+ + K G+ +A +F+GKD+ LL++ L
Sbjct: 231 SGALLMGTHVTSTMQK--GILMANVFQGKDM-LLFAGL 265
>At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR1)
identical to microtubule organization 1 protein
GI:14317953 from [Arabidopsis thaliana]
Length = 1978
Score = 27.5 bits (58), Expect = 6.4
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Frame = +2
Query: 173 AAPGSWSQVLTKTLRQNAE-NVEDVKIVAVDLQAMAALPGVKQ------------IQGDI 313
AA G S++L + ++ E N++D++ A+ L PG Q + +
Sbjct: 1031 AAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSKAMAGPVSKGV 1090
Query: 314 TKLSTACSIIKEFEGLKADLVVCDGAPDVTGLHDIDEYVQSQLLL 448
TK+S + S +G ++ V G+ +T +HDI +QSQ LL
Sbjct: 1091 TKISKSTSNGTLKQGNRSRAVPTKGSSQITSVHDI--AIQSQALL 1133
>At1g77170.1 68414.m08990 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 467
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -1
Query: 354 SNSFIIEHAVDSFVISPCICLTPGNAAIACKSTATILTSSTFSAFCRRV 208
+N F I H ++ FV + +TP + K AT+L++ T A RR+
Sbjct: 18 TNHFTIFHRLNHFVTTSSSSVTPLSPQDRNKLLATLLSNCTSLARVRRI 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,845,681
Number of Sequences: 28952
Number of extensions: 203345
Number of successful extensions: 543
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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