Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M24
(559 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 118 2e-27
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 50 1e-06
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 50 1e-06
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 45 4e-05
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 44 6e-05
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 43 2e-04
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 40 0.001
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 39 0.003
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.003
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 37 0.010
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.010
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 36 0.017
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 36 0.030
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 35 0.052
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.069
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 34 0.069
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 34 0.091
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 32 0.37
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 31 0.48
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 31 0.48
SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 31 0.84
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 31 0.84
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 30 1.1
SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29) 30 1.1
SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 30 1.1
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8) 30 1.5
SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_3245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 29 3.4
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 29 3.4
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 29 3.4
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 29 3.4
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_25707| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 28 4.5
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 28 4.5
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 28 4.5
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) 28 4.5
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 5.9
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 28 5.9
SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15) 28 5.9
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_55443| Best HMM Match : Homeobox (HMM E-Value=2.3e-26) 28 5.9
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 28 5.9
SB_28137| Best HMM Match : rve (HMM E-Value=0.00026) 28 5.9
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061) 27 7.9
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 27 7.9
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 27 7.9
SB_23092| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_12305| Best HMM Match : NAF1 (HMM E-Value=8) 27 7.9
SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 118 bits (285), Expect = 2e-27
Identities = 57/71 (80%), Positives = 66/71 (92%), Gaps = 1/71 (1%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
RLR+EF+P+GTI+SAKVM +D G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVAL
Sbjct: 227 RLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVAL 286
Query: 178 AQRKEDRKAHL 210
AQR+E+RKA L
Sbjct: 287 AQRREERKAQL 297
Score = 60.9 bits (141), Expect = 7e-10
Identities = 29/71 (40%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
++++ A G I S KVM + +G+SKGFGFV F +PEEA +AV +NG+ +G + L+
Sbjct: 124 QMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGR 183
Query: 178 AQRKEDRKAHL 210
A+++ +R A +
Sbjct: 184 AKKRAERAAEV 194
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
RL + F PFGT+ SAKV ++ SK FGFV + + A A+ MNG +G K L V
Sbjct: 277 RLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQ 336
Query: 175 LAQRKEDRKAH 207
L + K+ + +
Sbjct: 337 LKRPKDANRPY 347
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML--EDGRSKGFGFVC 93
L + F PFGT+ SAKV + + SK FG C
Sbjct: 245 LMQTFQPFGTVISAKVFIDKQTNMSKCFGECC 276
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L + F PFGT+ SAKV ++ SK FGFV + + A A+ MNG +G K L V L
Sbjct: 293 LMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQL 352
Query: 178 AQRKEDRKAH 207
+ K+ + +
Sbjct: 353 KRPKDANRPY 362
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
F PFGT+ S +++ E RSKG+GFV F E A +A+ +MNG + +PL + +
Sbjct: 262 FEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTER 321
Query: 190 EDRKAH 207
D A+
Sbjct: 322 GDSSAY 327
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
++K F G +TS K++ + G+S G+ FV + +P++A KAV EMNG + K L V+
Sbjct: 43 IKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSF 102
Query: 178 AQ 183
A+
Sbjct: 103 AR 104
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 141
L K F+P+G IT+ ++ L+ KG+GFV S+ EEA A+ +NG
Sbjct: 288 LYKLFSPYGAITNIELKLD----KGYGFVNMSNYEEACHAICCLNG 329
Score = 35.5 bits (78), Expect = 0.030
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGR 144
F PFG I ++KV+ + G +G GFV F EA A+ ++N +
Sbjct: 133 FKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLNNK 176
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +1
Query: 58 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 204
E GR +GFGFV F S EE KA+ E +G+ +P+ V AQ + +R A
Sbjct: 40 ETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQPRGERGA 88
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 186
F+ FG I ++ D G SKGF F+ F+S + + A+ MNG+ + +P+ V+ A +
Sbjct: 120 FSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 187 KEDR 198
KE +
Sbjct: 180 KESK 183
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +1
Query: 58 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 195
E GR +GFGFV F S EE KA+ E +G+ + +P+ V A+ + D
Sbjct: 132 ETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGD 177
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +1
Query: 58 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 201
E GRS+GFGFV S ++ A+ +MN VG + + VALA K + +
Sbjct: 44 ESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGGRNITVALALDKTENR 91
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +1
Query: 34 ITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 198
+ S KV+ E GR +GFGFV F S +E KA+ + +G + +P+ V AQ + +R
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGER 91
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +1
Query: 58 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
++ RS+GFGFV F++PE+A AV +NG+ V + L +A
Sbjct: 94 QEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIA 132
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 7 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
R F ++ + K++ G S GFGFV +++ E+A KA+ ++NG +G K L VA +
Sbjct: 64 RMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFS 123
Query: 181 Q 183
+
Sbjct: 124 R 124
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 165
F G + +M + R KGF FV ++ EEA A+ +NG + KPL
Sbjct: 295 FGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTLNGFMYTNKPL 346
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 126
L+ F+ +GTI +M DGRS+GFGFV + S + + +
Sbjct: 66 LKDYFSQWGTIVDCVIMKRDGRSRGFGFVTYESSDSVNEVL 106
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 67 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 195
+SKGFGFV F E+A KA+ EM+ +G K + A RK +
Sbjct: 552 KSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 138
L + FA + + AK++ + +SKG+GFV F P + KA+ EMN
Sbjct: 233 LTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREMN 279
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED----GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
L++ F+ FG ++ A V + R GFGFV F++ +A KA+ EMN + + +P+ V
Sbjct: 263 LKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEMNAKKILGRPVAV 322
Query: 172 ALAQRK 189
A K
Sbjct: 323 DWAVPK 328
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +1
Query: 67 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 201
R +GFG+V F+ E+A KA + N + + +P+++ +++K K
Sbjct: 60 RCRGFGYVTFALEEDALKA--KDNIKSIKGRPIHLDFSEKKARTK 102
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 195
F G + +V+ ++GRS+GFG+ F+S E+ KA+ E+NG + + + A K
Sbjct: 200 FEEKGLSATCRVITQEGRSRGFGYADFTSKEDYNKAL-ELNGEDCCGREIRINPANSKPS 258
Query: 196 R 198
R
Sbjct: 259 R 259
Score = 35.9 bits (79), Expect = 0.022
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 19 APFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 192
A F ++AKV+ E G S+GFGFV + E A K ++EM G V + + + A +
Sbjct: 307 AAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFASPRT 366
Query: 193 D 195
+
Sbjct: 367 E 367
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L F PFG IT ++ ++ SK GFGFV F E+ A+ MN + + + V L
Sbjct: 21 LHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNL 80
Query: 178 AQ 183
A+
Sbjct: 81 AK 82
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
+R F PFG I + + + + KGF FV + PE A A+ +MNG ++G + + V
Sbjct: 118 IRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
Score = 30.7 bits (66), Expect = 0.84
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 138
++ F FG + + E G+ KG+GF+ + + + A A+ MN
Sbjct: 215 IKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMN 261
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
+++ F+ G +T A+V + +G S+GF FV +++ EEA K NGR V + VA
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRVA 280
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +1
Query: 19 APFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM---NGRIVGTKPLYVALAQ 183
+P+G I ++ + G SKG+GFV +++ E A +A ++ + +G + L VA A+
Sbjct: 134 SPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQLLNTASKYIGGRILRVAFAE 193
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 67 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
R +GFGFV F++ EA KA ++NG IV + + V+L +
Sbjct: 122 RIEGFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQ 162
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 35.9 bits (79), Expect = 0.022
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
L++EF G + +V E RS+GF V F + E A KA+ EMNG V + V++A+
Sbjct: 124 LKEEFNHLGHVE--RVNFEKNRSQGF--VTFDTWEAADKAIDEMNGLKVQHVHIRVSMAR 179
Query: 184 RK 189
R+
Sbjct: 180 RQ 181
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAV 126
L F P+G I ++ + G+SKGFG+V + + E A +A+
Sbjct: 79 LESVFGPYGAIEDLSIIRTQTGKSKGFGYVTYENAESAQRAL 120
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 34.7 bits (76), Expect = 0.052
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 423
P+ PP Q FY P Q P PTP ++ PP +PS A +Y
Sbjct: 170 PSYPPTQPFYPPTQ-PFYPPTP--SSYPPTQPSYPPTAPSY 207
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 423
P PP Q FY P P P P + PP PS S+Y
Sbjct: 177 PFYPPTQPFYPPT--PSSYP-PTQPSYPPTAPSYPPTPSSY 214
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 34.7 bits (76), Expect = 0.052
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 25 FGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 135
+GTI S K +L+ + KG+GFV F SP A KAV +
Sbjct: 123 YGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAAL 161
Score = 30.7 bits (66), Expect = 0.84
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIV 150
L F+ +G + S +++ + D SKG GF S E+ + + + N +++
Sbjct: 195 LENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDFNKKML 244
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 34.3 bits (75), Expect = 0.069
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
+++ F FG I +V L+ RS+GFGFV F E+A K V + RI G + V L
Sbjct: 131 MKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDA-KNVLSTSHRIQG-RLCEVRL 188
Query: 178 AQRKED 195
+ KE+
Sbjct: 189 PRPKEE 194
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 34.3 bits (75), Expect = 0.069
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 76 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 195
G GFV F PE A KA E++G + + L++ A+ K++
Sbjct: 283 GIGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPAKAKKE 322
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 33.9 bits (74), Expect = 0.091
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
+L++ F+ G + S +++ E G+ KG+GF + E A A+ +NG + + L V
Sbjct: 40 QLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVD 99
Query: 175 LAQRKEDRK 201
A +++++
Sbjct: 100 SAASEKNKE 108
>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 33.9 bits (74), Expect = 0.091
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 52 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 165
++++GR KG FV S E+A +A+ E++G ++ KP+
Sbjct: 285 LMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPI 322
>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 32.7 bits (71), Expect = 0.21
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 315 CTTLLWSSTNAANTTYTPMDCPTT-CKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFS 491
C T+ +T NTT C TT C T H NT G T +T NT
Sbjct: 227 CNTIQ-CNTLQGNTT----QCNTTQCNTTHCNTTQGNTAQCNTTECNTAQCNTTQCNTAQ 281
Query: 492 RSKTNHRTTRCC 527
+ T TT+CC
Sbjct: 282 CNTTQCNTTQCC 293
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 31.9 bits (69), Expect = 0.37
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 153
LRK FA FG I A V+ + +SKG+GFV ++ + A A I G
Sbjct: 26 LRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNKRPMIEG 77
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 318 TTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNT 470
TT++ T NT+ TP+ P+T T+ + + + AT PS T S++T
Sbjct: 177 TTVVTQVTTMPNTSVTPLTSPSTSVTQRTRPTTPVTQEAT--PSQTSSAST 225
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 31.5 bits (68), Expect = 0.48
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEA----TKAVTEMNGR--IVGTK 159
LR+ F FG + VM + RS+GFGF+ F P+ E++G+ + TK
Sbjct: 124 LRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKMVTTTK 183
Query: 160 PLYV 171
+++
Sbjct: 184 KIFI 187
>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 31.1 bits (67), Expect = 0.64
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Frame = +3
Query: 216 TVHAT----HGKYAYATNGSDIPTK*CRRILCSHHTSCTTLLWSSTNAANTTYTPMDCPT 383
T+HAT H Y + T T R +C+ +T T+ TY + P
Sbjct: 173 TLHATYITLHAPYVHTTRHVHHTT----RTVCAQYTPRTSHYTHRMCTLRATYITIHAPY 228
Query: 384 TCKTKHSNTCIGLR-KYATTLPSSTKSSNTGCITYFSRSKTNHRTTR 521
T+H++ L YA T ++ T C Y R T+H T R
Sbjct: 229 AHSTRHTHRMCALHAPYAHTTRHVQHTTRTVCAHYTPR--TSHYTHR 273
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +3
Query: 216 TVHAT----HGKYAYATNGSDIPTK*CRRILCSHHTSCTTLLWSSTNAANTTYTPMDCPT 383
T+HAT H YA+ T T R +C+H+ T+ A + TY + P
Sbjct: 276 TLHATYITLHAPYAHTTRQVHHTT----RTVCAHYAPRTSHYTLRMRAVHATYITLHAPY 331
Query: 384 TCKTKH 401
T+H
Sbjct: 332 VHTTRH 337
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 30.7 bits (66), Expect = 0.84
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 67 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 192
R +GFGFV F S A KA + ++ K + V AQ KE
Sbjct: 10 RHRGFGFVTFESENSADKA-CDTQYHLINNKKVEVKKAQPKE 50
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 79 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 195
FGFV F + + A +AV + +GRI+ K + V + + D
Sbjct: 82 FGFVQFETEKGADEAVAKEHGRIINGKKIDVRIVNSRAD 120
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
LR+ F G + S +++ + G KGFG+V F S + A+ N G K
Sbjct: 72 LRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKMNNAEFKGRK 125
>SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29)
Length = 214
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +3
Query: 297 CSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCI 416
CS H +C + S T A N YT C T SN CI
Sbjct: 95 CSEHGACIDGVNSYTCACNLGYTGSTCNVTVNDCISNPCI 134
>SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 892
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 291 ILCSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPS 449
IL + T T++W T ++NTT+ + T T+ + + Y+ +P+
Sbjct: 242 ILMADITPGNTMIWKITTSSNTTWNDVSFAVTMDTQEVIVTVNGKSYSARVPT 294
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +3
Query: 297 CSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCI 416
CS H +C + S T A N YT C T SN CI
Sbjct: 674 CSEHGACIDGVNSYTCACNLGYTGSTCNVTVNDCISNPCI 713
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/58 (27%), Positives = 20/58 (34%)
Frame = +3
Query: 240 YAYATNGSDIPTK*CRRILCSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTC 413
Y Y +I T C C H +CT L+ YT +C T N C
Sbjct: 2080 YGYEGRNCEINTDDCAANPCLHGATCTDLVGGFVCTCALGYTDHNCSTIIDNCDPNPC 2137
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +3
Query: 297 CSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGC 476
C+H CT + + T YT +C T +S+ C Y T SS C
Sbjct: 2137 CNHSGICTNKIGNYTCLCKGGYTGWNCNTLIDFCYSDPC----AYGATCVSSLADYTCAC 2192
Query: 477 IT-YFSRSKTNH 509
+ Y R+ T +
Sbjct: 2193 VPGYTGRNCTTN 2204
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR 144
++K F +G +++L+DG +GFV F ++A AV E NG+
Sbjct: 19 VKKFFYTYGRFKIREIILKDG----YGFVEFDYSDDAEDAVYECNGK 61
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGR 144
F G I ++M++ G +KGF F FS+ +EA AV +++ +
Sbjct: 172 FEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKKLDNK 216
>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
Length = 245
Score = 29.9 bits (64), Expect = 1.5
Identities = 29/109 (26%), Positives = 43/109 (39%)
Frame = +3
Query: 141 TYCWNKTSLCCFSSTQGRPQSPFDFTVHATHGKYAYATNGSDIPTK*CRRILCSHHTSCT 320
T C+ T+ C +S+ P T T+ K + T+GS C I C+ +SC
Sbjct: 113 TICFGPTNRCTTTSSTTISVGP---TNSCTNVKDSTNTSGSSTTIDVCPIITCTTTSSCC 169
Query: 321 TLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSN 467
T S TT PTT + + + + TT S T S +
Sbjct: 170 TTFNGSPTIIGTT---SGSPTTSNSPNISNGPTISSSPTTSGSPTISDS 215
>SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 282 CRRILCSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTK- 458
C+ L SH+T C + ++ +A ++ +T ++C TKHS TT P +
Sbjct: 112 CKEQL-SHNTPCKSSCQTTHHARSSCHTTHSARSSCHTKHSTR----SSCHTTQPCKKQL 166
Query: 459 SSNTGCITYFSRS 497
S NT C S +
Sbjct: 167 SHNTPCTEKLSHN 179
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 312 SCTTLLWSSTNAANTT-YTPMDCPTTCKTKHSNTC--IGLRKYATTLPSSTKSSNTGCIT 482
+CTT S+T+ TT YTP TC T +++T Y T + +S T +
Sbjct: 105 TCTTSYTSTTSYTPTTSYTP-TTSYTCTTSYTSTTSYTPTTSYTPTTSYTLTTSYTCTTS 163
Query: 483 YFSRSKTNHRTTRCC 527
Y + H T+ C
Sbjct: 164 YTCTTSYTHTTSYTC 178
>SB_3245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 392 DQALKHL----HRLTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNK-VLLARLDQS 547
D L HL H I N+ + HQ + VLL QD + D++ VLL R D +
Sbjct: 191 DSVLNHLNVSKHHQGDILNYQIMFHQGESRKRQTVLLHRQDNNHDHQTVLLHRQDNN 247
>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Frame = +3
Query: 300 SHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNT--------CIGLRKYATTLPSST 455
S +TS T ++ST+ T + C TC SNT C Y +T +
Sbjct: 181 STYTSANTRTYTSTSTRANTISST-CANTCANTRSNTSANTRANTCSNTSTYTSTNTRAN 239
Query: 456 KSSNTGCITYFSRSKTNHRT 515
SSNT C S + T+ T
Sbjct: 240 TSSNT-CADTRSNTSTSSYT 258
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 141
L++ F P G I+ + + +SKGF F+ F E+A +A+ ++G
Sbjct: 197 LQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
+L+ F +G I + + + +GFV F+ E A +A+ +NG + L V+LA
Sbjct: 17 QLKAVFTKYGQIEKVR------KIRDYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLA 70
Query: 181 QRKEDR 198
+ R
Sbjct: 71 IPQSSR 76
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +1
Query: 325 FYGPAQMPQIRP----TPRWTAQPPVRPSTQT 408
FYG A P +RP TP TA+PP P T T
Sbjct: 1003 FYGCASDPVLRPADLPTPPITAKPPGGPDTTT 1034
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 55 LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
L+ GRSK +GFV F E KA+ I G K
Sbjct: 97 LKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQK 131
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
+ +EF FG + V GF F F +A AV E++GR + + V LA+
Sbjct: 18 IEREFETFGPLRDVWVARNP---PGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAK 74
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 25 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
+G I + ++ + G+ KGF F+C+ AV NG +G + + V
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRV 52
>SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEATKAVTEMNGR 144
L + F +G + S K+M E R++ GFV + ++ KA+ + G+
Sbjct: 222 LMRLFGKYGPLASVKIMWPRTEEEKSRNRNCGFVAYMRRKDGDKAIKHLTGK 273
>SB_25707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +3
Query: 306 HTSCTTLLWSSTNAANTTYTPMDCPT----TCKTKHSNTCIGLRKYATTLPSSTKSSNTG 473
+++CTT +T +NT YT C T TC T +TC Y + + +S+ T
Sbjct: 8 NSTCTT----NTYRSNTNYTYSTCTTNTNSTCTTNTYSTCT-TNTYRSNTNYTNRSNTTN 62
Query: 474 CITYFSRSKTNHRT 515
TY S + +R+
Sbjct: 63 --TYRSNTTNTYRS 74
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 58 EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 147
E+G++ G GFV F+SPE A +A+ + +I
Sbjct: 74 EEGKTTGEGFVEFASPEIAGQAMQKHKEKI 103
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 141
F+ +G + + + + + S+GF +V + PEE KA+ M+G
Sbjct: 1177 FSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDG 1220
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 85 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 201
+V F E+A KAV ++N R +P+Y L+ + R+
Sbjct: 116 YVKFRYEEDAEKAVNDLNNRWYNGQPIYAELSPVTDFRR 154
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 336 STNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSS 452
+T NTT T TT T H NT I TT+P++
Sbjct: 1095 TTAHINTTITTAHINTTITTAHINTTITTAHINTTIPTA 1133
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 267 IPTK*CRRILCSHHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLP 446
IPT + + HT+ T +T NTT T TT T H NT I TT+
Sbjct: 1130 IPTAHINTTITTAHTNTTI----TTAHINTTITTAHINTTITTAHINTTITTAHINTTIT 1185
Query: 447 SS 452
++
Sbjct: 1186 TA 1187
>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
Length = 293
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +1
Query: 268 FQPSSAGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQ--PPVRPSTQT-PASAYANMQ 435
+ P+S P P Q+ Y P PQ P P + Q PP P QT P A A Q
Sbjct: 153 YPPTSYPPQPYPAQPYPQQGYPPQPPPQAYPQPGYPPQGYPPTGPYPQTQPGYAGATPQ 211
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 73 KGFGFVCFSSPEEATKAVTEMNGR-IVGTK 159
+G+GFV F +A AV ++NGR ++G +
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGER 751
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 333 SSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATT-----LPSSTKSSNTGCITYFSRS 497
+ST A T + P T K SN + ++T +P ++KSS TG + SRS
Sbjct: 1749 ASTEATEMTQKFSNVPATVALKSSNVEAKITPKSSTDAARLIPKASKSS-TGSVNVKSRS 1807
Query: 498 KTN 506
TN
Sbjct: 1808 STN 1810
>SB_18498| Best HMM Match : PX (HMM E-Value=1.6e-15)
Length = 402
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 372 DCPTTCKTKHSNTCIGLRKYATTLPSSTKSS 464
D PT C + S++ IG A LP++T S+
Sbjct: 10 DPPTVCSERPSSSVIGANDSAGALPTTTNST 40
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +3
Query: 303 HHTSCTTLLWSSTNAANTTYTPMDCPTTCKTKHSNT-CIGLRKYAT-TLPSSTKSSNTGC 476
HHT C ST N P+ P+ ++++ +T C + ++T T P + +S
Sbjct: 1152 HHTKCHHTTSHSTITQNAITQPVTVPSHNQSQYHHTKCHHMTSHSTITQPVTVQSHKMPS 1211
Query: 477 ITYFSRSKTNHRTTRC 524
S + + + T+C
Sbjct: 1212 HKMRSHNHSQYHHTKC 1227
>SB_55443| Best HMM Match : Homeobox (HMM E-Value=2.3e-26)
Length = 245
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 310 PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
P R Y P Q P P P + A PP+ PS+ P
Sbjct: 175 PQVYRGY-PFQYPGTPPPPMYPAFPPIFPSSPPP 207
>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 336 STNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFSRSKT 503
S AN+ TP + P K HS +K A + +TKS RSK+
Sbjct: 493 SNRIANSNDTPTEQPLNMKEAHSKKSTATKKGAKSKSKATKSKRAKQTFTNKRSKS 548
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 333 SSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTG 473
S+ N+ NT P T+C+ S C+G T LP+ + G
Sbjct: 522 SAGNSINTERPPNVTQTSCERLKSKICLGFGYNDTILPNHLNHKSQG 568
>SB_28137| Best HMM Match : rve (HMM E-Value=0.00026)
Length = 293
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 98 EKHTNPKPLLRPSSNMTLAEVIVPK 24
++H P P+L P +T+ E +PK
Sbjct: 181 DRHVKPLPILHPGQPVTIQEPTIPK 205
>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 310 PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
P R Y P Q P P P + A PP+ PS+ P
Sbjct: 175 PQVYRGY-PFQYPGTPPPPMYPAFPPIFPSSPPP 207
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 301 PTIPPA--QRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASA 420
P PPA RF G +P P R +PP +PS Q+ A+A
Sbjct: 363 PDGPPAPEDRFKGKRPIPT--PRKRSVKEPPNKPSPQSTANA 402
>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
Length = 1060
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 417 RCRCLSAWSYRWLGSPSGCRSYL 349
RCR L+ + +G P G RSYL
Sbjct: 671 RCRILNTYRIDGVGQPKGSRSYL 693
>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +1
Query: 283 AGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 423
A +FVP +PP+ + P RP + A P P + + Y
Sbjct: 195 APNHFVPLLPPSPEPVPTPKAPASRPGTKRPASPSTPPKMPSKTAMY 241
>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
Length = 618
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +1
Query: 283 AGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 423
A +FVP +PP+ + P RP + A P P + + Y
Sbjct: 19 APNHFVPLLPPSPEPVPTPKAPASRPGTKRPASPSTPPKMPSKTAMY 65
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.5 bits (58), Expect = 7.9
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Frame = +3
Query: 315 CTTLLWSSTNAANTTYT-PMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSS--NTGCITY 485
C T+L NTT P +C TCK + C A LPS+ K + C+T
Sbjct: 1420 CITVLQPLNEKHNTTAECPSECSETCKPECPVKCCTGECPAGCLPSNCKPDCPSKCCLTI 1479
Query: 486 FSRSKTNHRTTRCC 527
+ T C
Sbjct: 1480 LEPLQEGPNATAYC 1493
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 16 FAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG 141
F FG + ++ E G+S+ GFV F S + A A MNG
Sbjct: 544 FNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMNG 586
>SB_23092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Frame = +3
Query: 291 ILCSHHT---SCT---TLLWSSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSS 452
I+C H C T+ S+ + NTT T KT +N C R+ TT ++
Sbjct: 142 IICERHNRTIQCPANKTIDLSNNHEDNTTTVQTTATTAKKTTTNNNCTNNREDKTTTATT 201
Query: 453 TKSSNTGCITYFSRSKTNH 509
T ++ T ++ +N+
Sbjct: 202 TNNNCTNNSNNREKNNSNN 220
>SB_12305| Best HMM Match : NAF1 (HMM E-Value=8)
Length = 400
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 307 IPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPA 414
IPP YG A +P P A P +P + P+
Sbjct: 17 IPPGAADYGQAGVPPTSAIPGSAAPPTAQPRAEAPS 52
>SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 304 WEQSILLHYLVGISDPFVAYAYLPCVACTVKSNGLCGLPCVELKQHKEVLFQQ 146
WE+ I H +S F+ YLP + SN + ++LKQ + L Q
Sbjct: 225 WEEIISKHLWTAVSTHFIENIYLPAAQSSSASNFNTAVD-IKLKQWADRLLPQ 276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.132 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,001,101
Number of Sequences: 59808
Number of extensions: 435500
Number of successful extensions: 3341
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 3022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3315
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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