Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M24
(559 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 107 7e-24
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 100 1e-21
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 95 2e-20
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 94 7e-20
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 92 2e-19
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 89 1e-18
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 85 3e-17
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 77 8e-15
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 56 2e-08
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 54 6e-08
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 54 6e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 54 9e-08
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 52 3e-07
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 52 3e-07
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 51 6e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 50 8e-07
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 50 8e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 49 2e-06
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 49 2e-06
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 48 3e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 48 4e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 4e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 48 4e-06
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 48 6e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 47 7e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 47 7e-06
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 47 1e-05
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 47 1e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 46 1e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 46 1e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 46 1e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 1e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 46 2e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 46 2e-05
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 45 3e-05
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 45 3e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 45 3e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 45 4e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 45 4e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 45 4e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 44 5e-05
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 44 5e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 44 7e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 44 7e-05
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 44 7e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 44 9e-05
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 43 1e-04
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 43 1e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 43 1e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 43 1e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 43 1e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 43 2e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 42 2e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 42 2e-04
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 42 2e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 42 2e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 42 2e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 42 2e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 42 3e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 42 4e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 42 4e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 42 4e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 41 5e-04
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 41 6e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 41 6e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 9e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 40 9e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 40 9e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 40 9e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 40 0.001
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 39 0.002
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 39 0.002
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.003
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.003
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 38 0.003
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 38 0.003
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 38 0.003
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 38 0.003
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 38 0.005
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 38 0.005
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 38 0.005
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 38 0.005
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 38 0.005
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.006
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 37 0.008
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 37 0.010
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 37 0.010
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 37 0.010
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 37 0.010
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 37 0.010
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 37 0.010
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 37 0.010
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.014
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 36 0.014
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.014
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 36 0.018
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 36 0.018
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 36 0.018
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.018
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 36 0.018
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 36 0.024
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 36 0.024
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 35 0.032
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 35 0.032
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.042
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 35 0.042
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 34 0.056
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 34 0.056
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 34 0.056
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 34 0.056
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 34 0.074
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 34 0.074
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 33 0.098
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 33 0.098
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 33 0.13
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 33 0.13
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.13
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 32 0.30
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 32 0.30
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 32 0.30
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 32 0.30
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 31 0.39
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 31 0.39
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 31 0.52
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 31 0.52
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 31 0.52
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.52
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.52
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 31 0.52
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 31 0.69
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 31 0.69
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 31 0.69
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 31 0.69
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 31 0.69
At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identica... 30 0.91
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 30 0.91
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 30 0.91
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 30 0.91
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 30 1.2
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 30 1.2
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 30 1.2
At5g61100.1 68418.m07666 hypothetical protein 29 2.1
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 2.1
At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative simil... 29 2.8
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 29 2.8
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 2.8
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 2.8
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t... 29 2.8
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 29 2.8
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 29 2.8
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 2.8
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 29 2.8
At4g11590.1 68417.m01857 F-box family protein contains weak hit ... 28 3.7
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 28 3.7
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 4.9
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 4.9
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 28 4.9
At2g21120.1 68415.m02506 expressed protein 28 4.9
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 28 4.9
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 27 6.4
At3g49760.1 68416.m05440 bZIP transcription factor family protei... 27 6.4
At1g47660.1 68414.m05295 hypothetical protein 27 6.4
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 27 8.5
At5g62210.1 68418.m07811 embryo-specific protein-related contain... 27 8.5
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 8.5
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 27 8.5
At3g62780.1 68416.m07053 C2 domain-containing protein contains s... 27 8.5
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 27 8.5
At3g55690.1 68416.m06187 expressed protein predicted proteins, A... 27 8.5
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 27 8.5
At1g29970.1 68414.m03665 expressed protein similar to GI:3128228... 27 8.5
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 107 bits (256), Expect = 7e-24
Identities = 67/146 (45%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
+LR+ FAPFGTITS KVM + G S+G GFV FS+PEEAT+A+TEMNG+++ TKPLYVAL
Sbjct: 342 KLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVAL 401
Query: 178 AQRKEDRKAHLTXXXXXXXXXXXXXXXXXIFQPSSAGGYFVPTIPP--AQRFYGPAQMPQ 351
AQRKEDRKA L Q GG PP Q FYG P
Sbjct: 402 AQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGG------PPMGQQLFYGQGP-PA 454
Query: 352 IRPTPRWTAQPPVRPSTQTPASAYAN 429
+ P P + Q + P + S N
Sbjct: 455 MIPQPGFGYQQQLVPGMRPGGSPMPN 480
Score = 60.5 bits (140), Expect = 7e-10
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
L K F FG TS +M + +G+SKGFGFV F + ++A +AV +NG+ K +V A
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
Query: 181 QRKEDRKAHL 210
Q+K +R+ L
Sbjct: 300 QKKSERETEL 309
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
L + F+ FG I S KV ++ G+SKG+GFV + + E A A+ ++NG ++ K +YV
Sbjct: 149 LHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 34.3 bits (75), Expect = 0.056
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
+L + F G + S +V + RS G+G+V +++P++A++A+ E+N + + + V
Sbjct: 60 QLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVM 119
Query: 175 LAQR 186
+ R
Sbjct: 120 YSVR 123
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 99.5 bits (237), Expect = 1e-21
Identities = 43/71 (60%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
+L++ F+ +G +TS+KVML G S+GFGFV +S+PEEA +A++EMNG+++G KPLY+AL
Sbjct: 347 KLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIAL 406
Query: 178 AQRKEDRKAHL 210
AQRKEDR+AHL
Sbjct: 407 AQRKEDRRAHL 417
Score = 61.3 bits (142), Expect = 4e-10
Identities = 34/70 (48%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
LRK F FG I+SA VM + G S+ FGFV F E A AV +MNG +G LYV A
Sbjct: 245 LRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304
Query: 181 QRKEDRKAHL 210
Q+K +R+ L
Sbjct: 305 QKKSEREEEL 314
Score = 55.2 bits (127), Expect = 3e-08
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
L + F+ FGTI S KV ++ GRSKG+GFV F E A A+ ++NG ++ K ++V
Sbjct: 152 LFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHF 211
Query: 181 QRKEDR 198
R+++R
Sbjct: 212 IRRQER 217
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 95.5 bits (227), Expect = 2e-20
Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 7/139 (5%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
+L++ F+PFGT+TS+KVM + +G SKG GFV F++PEEAT+A+++++G+++ +KPLYVA+
Sbjct: 147 KLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 206
Query: 178 AQRKEDRKAHLTXXXXXXXXXXXXXXXXXIFQPSSAGGYFVPTIPPA------QRFYGPA 339
AQRKEDR+ L QPS G +P PP Q FYG A
Sbjct: 207 AQRKEDRRVRLQAQFSQVRPVA--------MQPSV--GPRMPVYPPGGPGIGQQMFYGQA 256
Query: 340 QMPQIRPTPRWTAQPPVRP 396
I P P + Q + P
Sbjct: 257 PPAMIPPQPGYGYQQQLVP 275
Score = 62.5 bits (145), Expect = 2e-10
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
L+ F +G ITSA VM + +G+SKGFGFV F + ++A +AV +NG K YV A
Sbjct: 45 LKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 104
Query: 181 QRKEDRKAHL 210
Q+K +R+ L
Sbjct: 105 QKKSERETEL 114
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 93.9 bits (223), Expect = 7e-20
Identities = 42/71 (59%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
+L++ F+ +G +TS KVM+ G S+GFGFV +S+PEEA A+ EMNG+++G KPLYVAL
Sbjct: 343 KLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 402
Query: 178 AQRKEDRKAHL 210
AQRKE+R+AHL
Sbjct: 403 AQRKEERQAHL 413
Score = 64.9 bits (151), Expect = 3e-11
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
L+K F +G I+SA VM + G S+ FGFV F SPE A AV +MNG +G LYV A
Sbjct: 241 LKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 300
Query: 181 QRKEDRKAHL 210
Q+K DR+ L
Sbjct: 301 QKKSDREEEL 310
Score = 56.4 bits (130), Expect = 1e-08
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
L + F+ FGTI S KV ++ GRSKG+GFV F E A A+ ++NG ++ K ++V
Sbjct: 148 LYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHF 207
Query: 181 QRKEDR 198
R++DR
Sbjct: 208 VRRQDR 213
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 92.3 bits (219), Expect = 2e-19
Identities = 59/133 (44%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
+LR+ FA FGTITS KVM + G SKG GFV FS+ EA++ + EMNG++VG KPLYVAL
Sbjct: 343 KLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVAL 402
Query: 178 AQRKEDRKAHLTXXXXXXXXXXXXXXXXXIFQPSSAGGYFVPTIPPAQRFYGPAQMPQIR 357
AQRKE+R+A L + P GG P + Q FYG P I
Sbjct: 403 AQRKEERRAKLQAQFSQMRPAFIPGVGPRM--PIFTGG--APGL-GQQIFYGQGPPPIIP 457
Query: 358 PTPRWTAQPPVRP 396
P + QP + P
Sbjct: 458 HQPGFGYQPQLVP 470
Score = 62.9 bits (146), Expect = 1e-10
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
L+ F +G+I+SA VM + DG+S+ FGFV F +PE+A +AV +NG+ K YV A
Sbjct: 241 LKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 300
Query: 181 QRKEDRKAHLT 213
Q+K +R+ L+
Sbjct: 301 QKKSERELELS 311
Score = 54.4 bits (125), Expect = 5e-08
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
L + F+ GTI S KV + G+S+G+GFV F + + A A+ ++NG+++ K ++V
Sbjct: 150 LHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPF 209
Query: 181 QRKEDRKA 204
RKE+R++
Sbjct: 210 LRKEERES 217
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 89.4 bits (212), Expect = 1e-18
Identities = 43/70 (61%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
LRK F+ GTITS K+M ++ G+SKGFGFVCFS+PEEA AV +G++ KPLYVA+A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 181 QRKEDRKAHL 210
Q+KEDRK L
Sbjct: 380 QKKEDRKMQL 389
Score = 57.6 bits (133), Expect = 5e-09
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
LR++FA FG I S + ++ R +G+ FV F +PE+A +A +NG G+K LYV A
Sbjct: 217 LREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA 276
Query: 181 QRKEDRK 201
Q+K +R+
Sbjct: 277 QKKAERE 283
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
L+ F FG I S KV LEDG+S+G+GFV F + A A+ +N IV K +YV
Sbjct: 128 LQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKF 187
Query: 181 QRKEDR 198
+K DR
Sbjct: 188 MKKTDR 193
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
FA F ++TS ++ + GRS +G+ F S ++A A+ + N ++ K + V + R
Sbjct: 44 FAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRA 103
Query: 190 EDRK 201
D +
Sbjct: 104 PDAR 107
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 85.0 bits (201), Expect = 3e-17
Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
+L + F+ FGTITS KVM+ +G SKG GFV FS+ EEA+KA+ +MNG++VG KP+YV+L
Sbjct: 238 KLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSL 297
Query: 178 AQRKEDRKAHL 210
AQ KE K HL
Sbjct: 298 AQCKEQHKLHL 308
Score = 61.3 bits (142), Expect = 4e-10
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
L++ F FG ITSA VM + +G+S+ FGFV F E A A+ +MNG +V K L+V A
Sbjct: 135 LKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Query: 181 QRKEDRKAHL 210
QRK +R L
Sbjct: 195 QRKTNRTEDL 204
Score = 33.9 bits (74), Expect = 0.074
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
F+ FG + S KV + G SKG+GFV F S A NG ++ + ++V
Sbjct: 51 FSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHV 103
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 77.0 bits (181), Expect = 8e-15
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
RLR+ F +G I SAKVM E+GRSKGFGFVCFS+ EE+ +A +NG +V KP+ V +
Sbjct: 319 RLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRV 378
Query: 178 AQRKEDR 198
A+RKEDR
Sbjct: 379 AERKEDR 385
Score = 60.9 bits (141), Expect = 6e-10
Identities = 30/67 (44%), Positives = 44/67 (65%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
L + F PFG+I S KV+ E+G+SKGFGFV F + + A A + ++G +V K L+VA
Sbjct: 128 LERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFI 187
Query: 184 RKEDRKA 204
K++R A
Sbjct: 188 NKDERAA 194
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 192
F+ +GT++S VM + GRS+GFGFV F +PE A KA+ + G +G+K L+V A +K+
Sbjct: 222 FSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKD 281
Query: 193 DRKAHL 210
+R+ L
Sbjct: 282 ERREML 287
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 55.6 bits (128), Expect = 2e-08
Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
LR+ F+PFG I A+++ E R KGFGF+ F S ++A KA+ ++G+IV + ++V +
Sbjct: 23 LRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEV 82
Query: 178 AQRKEDRKA 204
A+ E+ +A
Sbjct: 83 AKNAEEVRA 91
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 54.0 bits (124), Expect = 6e-08
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
+G++ AKV+L+ GRSKG+GFV F+ E +A+TEMNG+ T+P+ + A K
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANK 234
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 54.0 bits (124), Expect = 6e-08
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L K FA F T AKV+ + G++KG+GFV F +P + A+ EMNG+ VG +P+ +
Sbjct: 153 LSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRK 212
Query: 178 AQRKE 192
+ KE
Sbjct: 213 SSWKE 217
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 53.6 bits (123), Expect = 9e-08
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
+L+ FA FG + A+V+ + GRSKGFGFV +++ E+A KA EMN + + ++V
Sbjct: 49 KLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVD 108
Query: 175 LAQRKEDRK 201
A+ +E R+
Sbjct: 109 PARPREPRR 117
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L++ F FG +T A V+ E GRS+GFGFV FS + A A+ EM+G+ + + + V L
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
Query: 178 AQRK 189
A +
Sbjct: 111 ATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L++ F FG +T A V+ E GRS+GFGFV FS + A A+ EM+G+ + + + V L
Sbjct: 51 LKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNL 110
Query: 178 AQRK 189
A +
Sbjct: 111 ATER 114
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 50.8 bits (116), Expect = 6e-07
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L + F+ G + A+++++ RSKGFGFV F+S +EA KA+ E NG+ + + ++V
Sbjct: 50 LSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDY 109
Query: 178 AQRKE 192
A+ K+
Sbjct: 110 AKAKQ 114
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 144
LR FA FG + AKV++ E GRS+GFGFV F+ AT A++EM+G+
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 144
LR FA FG + AKV++ E GRS+GFGFV F+ AT A++EM+G+
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +1
Query: 19 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 192
A + ++ AKV+++ GR+KG+GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +1
Query: 19 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 192
A + ++ AKV+++ GR+KG+GFV FS E +A+TEMNG T+P+ + A K+
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L + F+ FG I ++MLE GRS+GFGF+ F+ +++ EM+GR G + + V
Sbjct: 23 LERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVNR 82
Query: 178 AQRKEDR 198
A+ K R
Sbjct: 83 AEPKLGR 89
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 144
LR+ F +G + +V+L E GRS+GFGFV F+S E A+ A+ ++GR
Sbjct: 56 LREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGR 104
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
LR FA FG + AKV+ + G SKGFGFV +++ E++ K + M+G+ + ++
Sbjct: 72 LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEY 131
Query: 178 AQRKEDRKAH 207
A+ +E +++
Sbjct: 132 ARPREQSQSY 141
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +1
Query: 25 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 195
+ ++ AKV+ + GRSKG+GFV F+ E +A+ EMNG T+P+ ++ A K++
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Score = 34.3 bits (75), Expect = 0.056
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
L+K F+ G + K+ +KG+G+V F + A +AV M G+++G + + ++
Sbjct: 253 LKKAFSQLGEVIYVKIPA----TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRIS 305
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
+ ++ SAKV+++ GRSKG+GFV F E ++A+TEMNG + + V +A K
Sbjct: 226 YPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 153
LR+ F+ FG + S K+ + KG GFV F+ + A A+ +NG ++G
Sbjct: 337 LRQPFSQFGEVVSVKIPV----GKGCGFVQFADRKSAEDAIESLNGTVIG 382
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
LR+ FAPF + + + R KGFGF+ F S ++A KA+ +NG+IV + ++V A+
Sbjct: 87 LRQLFAPFARLIKDQ---QTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
Query: 184 RKE 192
E
Sbjct: 144 EVE 146
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 47.2 bits (107), Expect = 7e-06
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +1
Query: 19 APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 192
A + ++ AKV+ + GRSKG+GFV F+ E +A+TEMNG+ ++P+ A K+
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 47.2 bits (107), Expect = 7e-06
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Frame = +1
Query: 25 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
+ ++ AKV+++ GRSKG+GFV F E ++A+TEMNG ++ + V +A K
Sbjct: 237 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPK 293
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 153
L + F+ FG + S K+ + KG GFV F++ + A +A+ +NG ++G
Sbjct: 343 LMQPFSDFGEVVSVKIPV----GKGCGFVQFANRQSAEEAIGNLNGTVIG 388
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRI 147
RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV MNG++
Sbjct: 73 RLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV MNG+ + + V
Sbjct: 92 RLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVK 151
Query: 175 LAQ 183
Q
Sbjct: 152 FGQ 154
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 165
F+ F + + A+VM + GRS+GFGFV F + ++A A+ EMNG+ V ++ +
Sbjct: 168 FSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 219
Score = 33.9 bits (74), Expect = 0.074
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
L++ FA G I S K++ +D S +GFV + A+ A+ +NGR + +P+ V A
Sbjct: 79 LQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAY 136
Query: 184 ---RKEDRKAH 207
++ED +H
Sbjct: 137 ATGQREDTSSH 147
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 178 AQRK 189
AQ +
Sbjct: 82 AQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 178 AQRK 189
AQ +
Sbjct: 82 AQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG+ + + + V
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNE 81
Query: 178 AQRK 189
AQ +
Sbjct: 82 AQSR 85
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 165
L + F+ F + + A+VM + GRS+GFGFV F + ++A A+ EMNG+ + ++ +
Sbjct: 160 LYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
L++ F G + S+K++ +D S +GFV + A A+ +NGR + +P+ V A
Sbjct: 75 LQEIFTSTGPVESSKLIRKDKSS--YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAY 132
Query: 184 ---RKEDRKAH 207
++ED +H
Sbjct: 133 ATGQREDTSSH 143
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
RL + F+ G + A+V+ E GRS+GFGFV S +E +A++ ++G+ + + + V
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
Query: 175 LAQRKEDRKAH 207
+A+ + R+ +
Sbjct: 319 VAEERPPRRGY 329
Score = 34.3 bits (75), Expect = 0.056
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 138
F GT+ A+V+ E +S+GFGFV SS +EA AV + N
Sbjct: 170 FEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 212
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +1
Query: 25 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 141
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 263
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/66 (27%), Positives = 38/66 (57%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
L++ F+ FG I S K+ + KG GFV F + A +A+ ++NG ++G + + ++ +
Sbjct: 322 LKQPFSEFGEIVSVKIPV----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR 377
Query: 184 RKEDRK 201
+++
Sbjct: 378 NPANKQ 383
Score = 31.1 bits (67), Expect = 0.52
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 34 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 141
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNG 168
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +1
Query: 25 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 141
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 31.1 bits (67), Expect = 0.52
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 34 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 141
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Frame = +1
Query: 25 FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 141
+ ++ +AKV+L+ GRSKG+GFV F E TKA+TEMNG
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNG 261
Score = 35.1 bits (77), Expect = 0.032
Identities = 18/66 (27%), Positives = 37/66 (56%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
L++ F FG I S K+ + KG GFV F + A +A+ ++NG ++G + + ++ +
Sbjct: 320 LKQPFNEFGEIVSVKIPV----GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR 375
Query: 184 RKEDRK 201
+++
Sbjct: 376 NPANKQ 381
Score = 31.1 bits (67), Expect = 0.52
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 34 ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 141
I S KV+ +G S+G+GFV F S + A K + E NG
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNG 166
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
+L F +G IT ++M+ + GR +GFGF+ F+ A A+ M+GR +G K + V
Sbjct: 27 QLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVN 86
Query: 175 LAQRK 189
A+ K
Sbjct: 87 KAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
+L F +G IT ++M+ + GR +GFGF+ F+ A A+ M+GR +G K + V
Sbjct: 27 QLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVN 86
Query: 175 LAQRK 189
A+ K
Sbjct: 87 KAEPK 91
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L++EF+ FG I K++ ++ RSKG+ F+ F+S ++A A+ M+ R+ + +Y+ +
Sbjct: 56 LKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDI 115
Query: 178 AQ 183
A+
Sbjct: 116 AK 117
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L F FG + SAKV ++ G SK FGFV + S A A+ MNGR +G K L V L
Sbjct: 365 LAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQL 424
Score = 31.1 bits (67), Expect = 0.52
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 16 FAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG--RIVG-TKPLYVALAQ 183
F+ +GTI +++ SKG F+ + + E+A A+ +NG ++ G T PL V A
Sbjct: 126 FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWAD 185
Query: 184 RKEDR 198
+ +R
Sbjct: 186 TERER 190
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Frame = +1
Query: 40 SAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 186
SA+V+ D GRS G+GFV F++ EEA A+T++NG+ + +P+ + + R
Sbjct: 223 SARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLR 273
Score = 36.7 bits (81), Expect = 0.010
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 186
F GT+ + +++ + DG+++GF FV +S EEA A+ + + V + + V+ A+R
Sbjct: 115 FGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 172
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L F G + A+V+ + GRSKGFGFV SS +E KA+ +NG + + + V+
Sbjct: 265 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 324
Query: 178 AQRKEDR 198
A+ + R
Sbjct: 325 AEARPPR 331
Score = 34.7 bits (76), Expect = 0.042
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
+L + F G + +V+ + GRS+GFGFV S+ E A + NG +PL V
Sbjct: 114 QLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L F G + A+V+ + GRSKGFGFV SS +E KA+ +NG + + + V+
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 332
Query: 178 AQRKEDR 198
A+ + R
Sbjct: 333 AEARPPR 339
Score = 34.7 bits (76), Expect = 0.042
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
+L + F G + +V+ + GRS+GFGFV S+ E A + NG +PL V
Sbjct: 114 QLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
LR F +G + AKV+L+ GRS+GFGF+ F + +A+ MNG + + + V
Sbjct: 23 LRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDK 82
Query: 178 AQ 183
AQ
Sbjct: 83 AQ 84
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/49 (42%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 144
LR+ F+ +G + AK+++ E GRS+GF FV F+S EEA+ A+ +++G+
Sbjct: 50 LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQ 97
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 44.4 bits (100), Expect = 5e-05
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV-----TEMNGRIVGTKP 162
L++ F FG I A V+L E G S+GFGFV + S E A A+ E++GRI+G P
Sbjct: 52 LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHP 111
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGR 144
L+ F+ F +T A+VM GRS+G+GFV F S + A A++ MNG+
Sbjct: 47 LKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNG 141
L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMNG
Sbjct: 22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 44.0 bits (99), Expect = 7e-05
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
LR F FG + K++++ RSKG+ F+ +++ E A A+ EMNG+I+ + V +
Sbjct: 298 LRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDV 357
Query: 178 AQRKEDRK 201
A+ K R+
Sbjct: 358 AKTKPFRQ 365
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 43.6 bits (98), Expect = 9e-05
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
LR+ F+ +G + A VM + RS+GFGFV +SS EA AV+ M+G+ + + + V L
Sbjct: 19 LREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKL 78
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 141
L + F PFG +T V ++ S+GFGFV F S E+A +A+ ++NG
Sbjct: 190 LMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
F+ FG + + V+ +D G S+GF F+ F S + A +A+ M+GR++G K L V +
Sbjct: 37 FSDFGKVIRS-VLAKDFRGESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQRTPKV 95
Query: 190 ED 195
ED
Sbjct: 96 ED 97
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 141
L + F PFG +T V ++ G S+GFGFV F S E+A +A+ ++NG
Sbjct: 229 LMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L F PFG + SAKV ++ G SK FGF+ + S A A+ MNG + K L V L
Sbjct: 355 LAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
Score = 33.1 bits (72), Expect = 0.13
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 183
F+ +GTI +++ + SKG F+ + S E+A A+ +NGR + PL V A
Sbjct: 129 FSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWAD 188
Query: 184 RKEDRKA 204
+++R+A
Sbjct: 189 TEKERQA 195
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L F PFG + SAKV ++ G SK FGF+ + S A A+ MNG + K L V L
Sbjct: 346 LAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405
Score = 33.1 bits (72), Expect = 0.13
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 183
F+ +GTI +++ + SKG F+ + S E+A A+ +NGR + PL V A
Sbjct: 120 FSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWAD 179
Query: 184 RKEDRKA 204
+++R+A
Sbjct: 180 TEKERQA 186
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L+ F + AKV+ E GRS+GFGF+ F S E A+ MNG V + L + L
Sbjct: 235 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 294
Query: 178 AQRKE 192
A +E
Sbjct: 295 ASERE 299
Score = 35.1 bits (77), Expect = 0.032
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
L + F GT+ +++ + RS+GFGFV S EEA +A+ N +G + + V
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
+R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
+R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 33 MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGRK 86
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 165
F+ + T + A+VM + GRS+GFGFV F + ++A A+ E+ G+ +G++ +
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQI 210
Score = 31.5 bits (68), Expect = 0.39
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
L++ FA G + S K++ ++ S +GFV + A A+ +NGR + +P+ V A
Sbjct: 70 LQEVFAGTGPVESCKLIRKEKSS--YGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAY 127
Query: 184 ---RKEDRKAH 207
++ED +H
Sbjct: 128 ASGQREDTSSH 138
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 159
RL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE ++GR+V K
Sbjct: 21 RLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 159
F FGT T VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 159
RL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE ++GR+V K
Sbjct: 21 RLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAK 78
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 159
F FGT T VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L F+ G + A+V+ + GRSKGFGFV + S +E A+ ++G + + + V+
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279
Query: 178 AQRKEDRKAH 207
A+ + R+ +
Sbjct: 280 AEARPPRRQY 289
Score = 37.1 bits (82), Expect = 0.008
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
+L + F G + +V+ + GRS+GFGFV SS E A + NG + +PL V
Sbjct: 106 QLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 186
F+ FG I S ++ D G S+GFGF+ + S E + A+ M G+ + + + V+ A +
Sbjct: 132 FSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYK 191
Query: 187 KEDR 198
K+ +
Sbjct: 192 KDTK 195
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
F G + A+V+ + GRS+G+GFVC+SS E A+ ++G + + + V LAQ K
Sbjct: 197 FRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
Query: 190 E 192
+
Sbjct: 257 K 257
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 58 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 210
+ G+S+GF FV S+ E+ + ++G + L V A + + K L
Sbjct: 121 DTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL 171
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
+R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G K
Sbjct: 33 MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGRK 86
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
RL + F+ G + A+V+ E GRS+GFGFV S+ E A+ ++G+ + + + V
Sbjct: 222 RLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
Query: 175 LAQRKEDR 198
+A+ + R
Sbjct: 282 VAEERTRR 289
Score = 35.9 bits (79), Expect = 0.018
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
F GT+ ++V+ + +S+GFGFV S+ EEA KAV + N V + L V A +
Sbjct: 133 FEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPR 192
Query: 190 EDR 198
R
Sbjct: 193 GSR 195
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
+R+ F FG I A V+ + GRSKG+GFV F E A +A MN I G +
Sbjct: 38 MRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRR 91
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 132
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 132
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L FA +G + +K++ E GRS+GFGFV F + A+ MNG+ + + + V
Sbjct: 24 LETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNE 83
Query: 178 AQRK 189
AQ +
Sbjct: 84 AQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L FA +G + +K++ E GRS+GFGFV F + A+ MNG+ + + + V
Sbjct: 24 LETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNE 83
Query: 178 AQRK 189
AQ +
Sbjct: 84 AQSR 87
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
LR F FG + ++++ R KGF F+ + + EEA KA+ M+G+ + + ++V
Sbjct: 93 LRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEE 152
Query: 178 AQRKED 195
A+ + D
Sbjct: 153 AKTRSD 158
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = +1
Query: 43 AKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 165
A+VM + GRS+GFGFV F + ++A A+ EMNG+ V ++ +
Sbjct: 181 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 223
Score = 33.9 bits (74), Expect = 0.074
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
L++ FA G I S K++ +D S +GFV + A+ A+ +NGR + +P+ V A
Sbjct: 79 LQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAY 136
Query: 184 ---RKEDRKAH 207
++ED +H
Sbjct: 137 ATGQREDTSSH 147
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 150
L + F+ +G + V+++ R KGF +V FSS EEA KA+ E+N ++V
Sbjct: 37 LTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLV 87
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
+LR+ F +G ++ A VM + GR +GFGFV FS P + + E + + T+ + V
Sbjct: 21 KLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHS--IDTREVDVK 78
Query: 175 LAQRKEDRK 201
A +E+++
Sbjct: 79 RAMSREEQQ 87
Score = 31.1 bits (67), Expect = 0.52
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 7 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
R+ F +G +T +M + R +GFGFV F S E+A +V + K + V A
Sbjct: 127 RQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLHKTFHDLSGKQVEVKRA 185
Query: 181 QRKE 192
K+
Sbjct: 186 LPKD 189
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 40.7 bits (91), Expect = 6e-04
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L+ F+ FG + ++ + GRS+GFGFV F+ +A A M+G+ + +PL ++
Sbjct: 57 LKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISF 116
Query: 178 A 180
A
Sbjct: 117 A 117
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 40.3 bits (90), Expect = 9e-04
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 61 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 204
DG+S+ FGF+ F S +EA +A+ N +GT + V +A + D A
Sbjct: 5 DGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENA 52
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 40.3 bits (90), Expect = 9e-04
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 16 FAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
F G + ++ +DG KG+G + F+SPEEA KA+ EMNG+++ + + + LA +
Sbjct: 404 FKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL-EMNGKLLLGRDVRLDLANER 461
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 40.3 bits (90), Expect = 9e-04
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
LR+ F +G I A V+ + GRSKG+GFV F PE A +A + I G +
Sbjct: 40 LRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRR 93
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 40.3 bits (90), Expect = 9e-04
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
LR+ F +G I A V+ + GRSKG+GFV F PE A +A + I G +
Sbjct: 40 LRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRR 93
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMN----GRIVGTKPLYV 171
F FG I AKV+ + RSKGFGFV F E AT+A N GR V K Y+
Sbjct: 29 FERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENPNHTIDGRTVNCKLAYL 86
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT---EMNGRIVGTK 159
RLR F FG + A +M + GR++GFGFV F+ P A + V ++G+IV K
Sbjct: 21 RLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +1
Query: 7 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 159
+K FA FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT---EMNGRIVGTK 159
RLR F FG + A +M + GR++GFGFV F+ P A + V ++G+IV K
Sbjct: 21 RLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +1
Query: 7 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 159
+K FA FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
F+ FG I AKV+ + G SKG+GFV ++ + A AV MNG + L V +A
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
F+ FG I AKV+ + G SKG+GFV ++ + A AV MNG + L V +A
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/57 (29%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
+R+ F+ +G++ + K++ + R K +GFV FS+ A A+ +M+G+ +G + + V
Sbjct: 23 VRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMDGKSIGGRAVRV 79
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 159
RL++ F +G + A +M + GR++GFGF+ F+ P A + + + ++GR V K
Sbjct: 30 RLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAK 87
Score = 35.1 bits (77), Expect = 0.032
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 159
F FGTI VM + R +GFGF+ F S E K E+NG++V K
Sbjct: 142 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNGRIV 150
L F+ G + SAKV G SK GFGFV FSS E+ A+ +N ++
Sbjct: 193 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Score = 35.5 bits (78), Expect = 0.024
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
+L K G + +VM + GRS+ FGF S E+A V ++NG V + + V
Sbjct: 91 QLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVN 150
Query: 175 LAQR 186
+ ++
Sbjct: 151 ITEK 154
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 144
F FG + +K+++ E GRSKGF FV F + A+ MNG+
Sbjct: 64 FNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQ 108
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +1
Query: 7 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT----EMNGRIVGTK 159
+K FA FG IT VM + R +GFGF+ + S E K + E+NG++V K
Sbjct: 50 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 106
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
LR F FG + + G +GFGFV + E+A +A+ MN +++G + + +
Sbjct: 63 LRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVF 122
Query: 178 AQRKEDRK 201
A+ E+RK
Sbjct: 123 AE--ENRK 128
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 29 MKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 37.5 bits (83), Expect = 0.006
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L+ + FG + VM + GRS+GFG+V F+S E+A A+ +G + L V +
Sbjct: 19 LKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--KGEHFLGNRILEVKV 76
Query: 178 AQRKEDRK 201
A KE+ +
Sbjct: 77 ATPKEEMR 84
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 37.1 bits (82), Expect = 0.008
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
LRK F FG + + + G +GFGFV F P +A A M+G ++ + L V
Sbjct: 52 LRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVF 111
Query: 178 AQRKEDRK 201
A+ E+RK
Sbjct: 112 AE--ENRK 117
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
FA +G + + + G S+GF FV + +EA KAV ++GR+V + + V A+
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
FA +G + + + G S+GF FV + +EA KAV ++GR+V + + V A+
Sbjct: 36 FAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAK 93
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 159
RLR F+ +G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 21 RLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
Score = 33.9 bits (74), Expect = 0.074
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 159
F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 159
RLR F+ +G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 21 RLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
Score = 33.9 bits (74), Expect = 0.074
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 159
F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 36.7 bits (81), Expect = 0.010
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 159
RLR F+ +G + A +M + GR++GFGF+ F+ P + + + + ++GR V K
Sbjct: 21 RLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAK 78
Score = 33.9 bits (74), Expect = 0.074
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 159
F FGTI VM + R +GFGF+ F S + K E+NG++V K
Sbjct: 130 FDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.010
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
LR+ F FG + + + G +GFGF+ F P +A +A +M+G ++ + L V
Sbjct: 53 LRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVF 112
Query: 178 AQRKEDRK 201
A+ E+RK
Sbjct: 113 AE--ENRK 118
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 58 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
E G KGF FV F+ ++A A+ + NG + G +P+ V A K
Sbjct: 367 ETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPK 410
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.014
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 28 GTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
G + S ++M+ +G+ G+GFV F+S +E KA+ NG + +++ +A+
Sbjct: 268 GEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNGEYLHDHKIFIDVAK 320
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 189
F G + ++++ G+ G GFV F+S EA +A+ + NG + +++ +A +K
Sbjct: 147 FKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKK 205
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 64 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
G G GFV F+S EA KA+ +MNG + ++ +++ + +
Sbjct: 526 GEHVGCGFVEFASVNEAQKALQKMNGENLRSREIFLDVVE 565
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 105
LR+ F+ FG + VM E GR +GFGFV FS P
Sbjct: 22 LREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 31.1 bits (67), Expect = 0.52
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +1
Query: 7 RKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KAVTEMNGRIVGTK 159
R F +G ++ A +M++ R +GFGFV F S + K ++NG+ V K
Sbjct: 127 RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVK 183
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 147
LRK F FG++ +V ++ G KGFGFV F+ E+A A+ +NG++
Sbjct: 301 LRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLNGQL 348
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 35.9 bits (79), Expect = 0.018
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
RLR F+ G I K+ + DG+S+ F ++ F + +EA A+T +N + T + V +
Sbjct: 18 RLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFIDTYRISVEV 77
Query: 178 A 180
A
Sbjct: 78 A 78
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 35.9 bits (79), Expect = 0.018
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
+L++ F G +T G + FGFV ++ A KAV + V +PL V LA
Sbjct: 307 QLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLA 366
Query: 181 QRKEDRK 201
+ + +RK
Sbjct: 367 KPQAERK 373
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
LR G I ++M + G SKG+ FV F + + A KA+ E++ + K + +L
Sbjct: 132 LRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSL 191
Query: 178 AQRK 189
++ K
Sbjct: 192 SETK 195
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 35.9 bits (79), Expect = 0.018
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 58 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 198
+DG +GFG V F+S EEA KA+ E +GR + + + + +AQ + +R
Sbjct: 333 DDGSFRGFGHVEFASSEEAQKAL-EFHGRPLLGREIRLDIAQERGER 378
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.9 bits (79), Expect = 0.018
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMNG 141
L F PFG I K L+ K FGFV F E+A+ A+ M+G
Sbjct: 29 LHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDG 76
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 35.9 bits (79), Expect = 0.018
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
F PFGT+ S +V + G S+G G+V S A A+ ++G VG + + V
Sbjct: 128 FQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRV 181
Score = 35.9 bits (79), Expect = 0.018
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 141
LR F+ FGTI S +V+ + GR++ F F+ F+S EE A++ NG
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNG 274
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 35.5 bits (78), Expect = 0.024
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 153
LR F+ +G + A V+L+ G+SKG+GFV F + A A+ E + +I G
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 35.5 bits (78), Expect = 0.024
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 153
LR F+ +G + A V+L+ G+SKG+GFV F + A A+ E + +I G
Sbjct: 91 LRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 35.1 bits (77), Expect = 0.032
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 10 KEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 159
K F +G IT + +M + G+ +GFGF+ F+ P K + + +NG+ V K
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIK 91
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 138
L+ FA +G + +V+ E RS+GFGFV F S E + +++ N
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 35.1 bits (77), Expect = 0.032
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 10 KEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 159
K F +G IT + +M + G+ +GFGF+ F+ P K + + +NG+ V K
Sbjct: 37 KHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIK 91
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 138
L+ FA +G + +V+ E RS+GFGFV F S E + +++ N
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.042
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 147
+LR+ F FG + ++ L E G+ KGFGF+ F E + A +NG++
Sbjct: 280 QLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKL 330
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 34.7 bits (76), Expect = 0.042
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L+ F +G I ++M + GRS+GFGFV F + + + ++ +G K + +
Sbjct: 173 LKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKR 232
Query: 178 AQRK 189
A+ K
Sbjct: 233 AEPK 236
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 132
F FG + + +M + G +GFGFV F+ A K + E
Sbjct: 86 FGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 34.3 bits (75), Expect = 0.056
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 138
F+ FGT+ +V + G+SK FGF+ F PE A A MN
Sbjct: 80 FSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMN 122
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 34.3 bits (75), Expect = 0.056
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 126
LR+ F FG + A V+ E GRSKG+GF+ F +A+
Sbjct: 28 LRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 34.3 bits (75), Expect = 0.056
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 147
L+ F +G IT V+++ GR+KGFGFV F + + A A+ R+
Sbjct: 179 LKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRM 228
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 34.3 bits (75), Expect = 0.056
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L++ F+ +G + A V E G+ +GFGFV F++ + KA+ + + I+G KP+ V
Sbjct: 22 LKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTH-FILG-KPVDVRK 79
Query: 178 AQRKED 195
A RK +
Sbjct: 80 AIRKHE 85
Score = 30.3 bits (65), Expect = 0.91
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDG---RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 186
F FG T VM DG R +GFGFV + S E++ + V + N + K + V A
Sbjct: 140 FERFGRTTDVVVM-HDGVTNRPRGFGFVTYDS-EDSVEVVMQSNFHELSDKRVEVKRAIP 197
Query: 187 KE 192
KE
Sbjct: 198 KE 199
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.9 bits (74), Expect = 0.074
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 183
F FG + +M ++ R S+G GFV +SS E A A+ +NG +PL V A+
Sbjct: 231 FLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAE 290
Query: 184 RKEDR 198
K +
Sbjct: 291 PKRPK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.9 bits (74), Expect = 0.074
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQ 183
F FG + +M ++ R S+G GFV +SS E A A+ +NG +PL V A+
Sbjct: 231 FLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAE 290
Query: 184 RKEDR 198
K +
Sbjct: 291 PKRPK 295
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 33.5 bits (73), Expect = 0.098
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPA 414
PT PP+Q P P +P + +QPP +P TQ P+
Sbjct: 24 PTRPPSQPPSHPPIQPSSQPPTQPPSQPPTQPPTQPPS 61
Score = 30.3 bits (65), Expect = 0.91
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
P+ PP Q P P +P + QPP P TQ P
Sbjct: 32 PSHPPIQPSSQPPTQPPSQPPTQPPTQPPSHPPTQPP 68
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPA 414
PT PP+Q P P +P QPP P +Q+P+
Sbjct: 44 PTQPPSQ----PPTQPPTQPPSHPPTQPPTPPPSQSPS 77
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
P+ PP+ P+ P +P + QPP +P + P
Sbjct: 28 PSQPPSHPPIQPSSQPPTQPPSQPPTQPPTQPPSHPP 64
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 33.5 bits (73), Expect = 0.098
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA-----VTEMNGRIVGTKPLYVA 174
F+ FG + +K++ + G+S+ FGFV F + T A V E + V + V
Sbjct: 27 FSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMDVEESRSKCVNVGSITVE 86
Query: 175 LA-QRKEDRKA 204
+A QR+++R A
Sbjct: 87 VARQRRKNRSA 97
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 150
F +G I V+++ G++KGFGFV F + + A +A+ E RI+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL 170
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 150
F +G I V+++ G++KGFGFV F + + A +A+ E RI+
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRIL 170
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L FA G +T ++L+ S+GFGF+ S +A + + ++ ++ + + V
Sbjct: 91 LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150
Query: 178 AQRKEDR 198
A+R+ R
Sbjct: 151 ARRRRGR 157
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
+ K F P+G +T+ ++ + F FV F + E+ATKA+ + + + V A
Sbjct: 110 IEKHFEPYGKVTNVRIR------RNFSFVQFETQEDATKALEATQRSKILDRVVSVEYAL 163
Query: 184 RKEDRK 201
+ +D +
Sbjct: 164 KDDDER 169
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 31.9 bits (69), Expect = 0.30
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
F +G I K +++ G+SKG+GF+ F S A A+ + +I GT+ LA
Sbjct: 148 FKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKI-GTRMTACQLA 203
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 31.9 bits (69), Expect = 0.30
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 85 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 210
FV FS PEE TKA+ +++GR G + + ++ K L
Sbjct: 336 FVQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKFSKNEL 377
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 31.9 bits (69), Expect = 0.30
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 52 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
++++GR +G F+ F S E A +A+ +NG + KP+ +
Sbjct: 390 LMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMII 429
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 31.5 bits (68), Expect = 0.39
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 10 KEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV----TEMNGRIVGTK 159
++F P + K E ++ GFGF+ +++ + A KAV E +GRI+ K
Sbjct: 186 RQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 31.5 bits (68), Expect = 0.39
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRI 147
L+ F +G I V+++ GR KG+GFV F + + A +A+ R+
Sbjct: 424 LKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPEKRM 473
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.1 bits (67), Expect = 0.52
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 10 KEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 153
K F +G IT + +M + G+ +GFGFV ++ K + + N I+G
Sbjct: 60 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD-NHIIIG 108
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPE 108
F FG + ++M + GRS+GFGFV + S +
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESED 182
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 31.1 bits (67), Expect = 0.52
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +1
Query: 301 PTIPPAQR--FYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
PT PP Q P P P T PPV+P T TP
Sbjct: 142 PTTPPVQSPPVQPPTYKPPTSPVKPPTTTPPVKPPTTTP 180
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 31.1 bits (67), Expect = 0.52
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 16 FAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG--RIVG-TKPLYVALAQ 183
F+ +GTI +++ SKG F+ + + E+A A+ +NG ++ G T PL V A
Sbjct: 126 FSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWAD 185
Query: 184 RKEDR 198
+ +R
Sbjct: 186 TERER 190
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
F G + S ++++ + + G+GFV F+SP A A+ + NG + +++ +A+
Sbjct: 702 FNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAK 758
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
F G + S ++ + +G GFV F+S EA KA+ NG + L + +A
Sbjct: 584 FKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKNGEYLCGNKLILGMA 639
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.1 bits (67), Expect = 0.52
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 150
F+ +G I ++ + G +SKGF F+ + AV +NG +V
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALV 102
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 31.1 bits (67), Expect = 0.52
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 147
F+ G I +++++ G G GFV F+S EA KA+ + G+I
Sbjct: 396 FSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
Score = 30.3 bits (65), Expect = 0.91
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 49 VMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 141
V+ +G+ G+GFV F+S A KA+ E NG
Sbjct: 190 VVNHEGKHVGYGFVEFASAYGANKALEEKNG 220
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.7 bits (66), Expect = 0.69
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L + F +G I K + + G+SKG+GF+ + S A A+ + +I G++ L
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQL 214
Query: 178 AQR 186
A +
Sbjct: 215 ASK 217
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.7 bits (66), Expect = 0.69
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L + F +G I K + + G+SKG+GF+ + S A A+ + +I G++ L
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQL 214
Query: 178 AQR 186
A +
Sbjct: 215 ASK 217
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 30.7 bits (66), Expect = 0.69
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L + F +G I K + + G+SKG+GF+ + S A A+ + +I G++ L
Sbjct: 156 LIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKI-GSRMTACQL 214
Query: 178 AQR 186
A +
Sbjct: 215 ASK 217
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 30.7 bits (66), Expect = 0.69
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQ-TPASAYAN 429
P +PP + PAQ+P PP RP Q TP + + N
Sbjct: 50 PLVPPGPPYAPPAQIPSSLLPTNLPPPPPFRPGMQFTPVANFQN 93
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 30.7 bits (66), Expect = 0.69
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASA 420
P PP + P P ++P A+PPV+P P A
Sbjct: 91 PVYPPTKAPVKPPTKPPVKPPVSPPAKPPVKPPVYPPTKA 130
Score = 30.7 bits (66), Expect = 0.69
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASA 420
P PP + P P ++P A+PPV+P P A
Sbjct: 163 PVYPPTKAPVKPPTKPPVKPPVSPPAKPPVKPPVYPPTKA 202
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 301 PTIPPAQR-FYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
PT PP + Y P + P ++P + +PPV P T+ P
Sbjct: 135 PTKPPVKPPVYPPTKAP-VKPPTKPPVKPPVYPPTKAP 171
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
PT PP + P P ++P + PV+P T+ P
Sbjct: 103 PTKPPVKPPVSPPAKPPVKPPVYPPTKAPVKPPTKPP 139
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPAS 417
P PP P P + P + +PPV P T+ P +
Sbjct: 179 PVKPPVSPPAKPPVKPPVYPPTKAPVKPPVSPPTKPPVT 217
Score = 27.1 bits (57), Expect = 8.5
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = +1
Query: 301 PTIPPAQR-FYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQXXXXXXXXXXXXXX 477
P PP + Y P + P ++P +PPV P P + +
Sbjct: 187 PAKPPVKPPVYPPTKAP-VKPPVSPPTKPPVTPPVYPPKFNRSLVAVRGTVYCKSCKYAA 245
Query: 478 XXTSLGARPITG 513
T LGA+PI G
Sbjct: 246 FNTLLGAKPIEG 257
>At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identical
to gi:3883120 gb:AAC77823
Length = 131
Score = 30.3 bits (65), Expect = 0.91
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Frame = +1
Query: 274 PSSAGGYFVPTIPPAQRFYGPAQMPQIRP--------TPRWTAQPPVRPSTQTPAS 417
PS+ GG + P ++ PA P++ P TP +A PP P +P +
Sbjct: 29 PSNVGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAALTPESSASPPSPPLADSPTA 84
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 30.3 bits (65), Expect = 0.91
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 159
F +G I A ++ + RSKG+GFV F + AT+A + I G +
Sbjct: 37 FIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 30.3 bits (65), Expect = 0.91
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRP 396
P PP + P Q P ++ P T PPV+P
Sbjct: 474 PVKPPTPTYSPPVQPPPVQKPPTPTYSPPVKP 505
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +1
Query: 307 IPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
+PP + P + P + P T PP++P P
Sbjct: 157 MPPTPTYSPPIKPPPVHKPPTPTYSPPIKPPVHKP 191
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 310 PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
PP + P + P I+ P T PP++P P
Sbjct: 494 PPTPTYSPPVKPPPIQKPPTPTYSPPIKPPPVKP 527
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRP 396
P PP + P + P + P T PP++P
Sbjct: 524 PVKPPTPTYSPPIKPPPVHKPPTPTYSPPIKP 555
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 307 IPPAQRFYGPAQMPQIRPTPRWTAQPPVRP 396
+PP + P + P ++ P T PPV+P
Sbjct: 679 LPPTPTYSPPVKPPPVQVPPTPTYSPPVKP 708
Score = 27.5 bits (58), Expect = 6.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 307 IPPAQRFYGPAQMPQIRPTPRWTAQPPVRP 396
+PP + P + P ++ P T PP++P
Sbjct: 696 VPPTPTYSPPVKPPPVQVPPTPTYSPPIKP 725
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 310 PPAQRFYGPAQMPQIRPTPRWTAQPPVRP 396
PP + P + P ++ P T PP++P
Sbjct: 293 PPTPTYSPPVKSPPVQKPPTPTYSPPIKP 321
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 310 PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
PP + P + P ++ P T PP++P P
Sbjct: 310 PPTPTYSPPIKPPPVQKPPTPTYSPPIKPPPVKP 343
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 30.3 bits (65), Expect = 0.91
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 16 FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 141
F FG I + + L+ G KG+ + + EEA A++ MNG
Sbjct: 115 FGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 304 TIPPAQRFYGPAQ--MPQIRPT-PRWTAQPPVRPSTQTPA 414
T+PP P Q +PQ +PT P+ T PP+ PSTQ P+
Sbjct: 52 TMPPVPSLPTPGQQTLPQPQPTLPQPTGLPPM-PSTQIPS 90
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMN 138
LR EF+ I +++ + S+GF FV F S E+ATKA+ N
Sbjct: 474 LRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATN 520
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 174
++R+ FG + ++ E G SKG+ F + P A +NG +G K L V
Sbjct: 390 QIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVR 449
Query: 175 LA 180
A
Sbjct: 450 RA 451
>At5g61100.1 68418.m07666 hypothetical protein
Length = 227
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = -1
Query: 274 VGISDPFVAYAYLPCVACTVKSNGLCGLPCVELKQHKEVLFQQYVHSFQ*PLLWLLQEMK 95
+ +SD V PC C +N L + C + +E + V + P LW+ +E +
Sbjct: 20 LSLSDSLVKLKKKPCEVCGSDANELLMMTCFMCRDTREHTYCARVMFQRVPRLWICEECR 79
Query: 94 N 92
+
Sbjct: 80 D 80
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 67 RSKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 198
+S+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 53
>At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative similar
to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
gi|5821406|dbj|BAA83809
Length = 910
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 395 QALKHLHRLTQICNHPTVLHQELQHRLHYVL 487
+A+KH+ LTQ HP V L H L YVL
Sbjct: 85 EAIKHVKALTQFGPHP-VSSDALVHALEYVL 114
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 292 YFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
Y P PP + P P ++P P T +PP P+ TP
Sbjct: 94 YVKPPPPPTVK---PPPPPYVKPPPPPTVKPPPPPTPYTP 130
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 301 PTI-PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
PT+ PP + P P ++P P +PP P+ + P
Sbjct: 85 PTVKPPPPPYVKPPPPPTVKPPPPPYVKPPPPPTVKPP 122
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 301 PTI-PPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
PT+ PP + P P ++P P T P P+ TP
Sbjct: 101 PTVKPPPPPYVKPPPPPTVKPPPPPTPYTPPPPTPYTP 138
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
+ + F P+G + + ++ + F FV F++ E+ATKA+ + + K + V A
Sbjct: 86 MERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYAL 139
Query: 184 R----KEDRKA 204
R +EDR A
Sbjct: 140 REAGEREDRYA 150
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
+ + F P+G + + ++ + F FV F++ E+ATKA+ + + K + V A
Sbjct: 112 MERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYAL 165
Query: 184 R----KEDRKA 204
R +EDR A
Sbjct: 166 REAGEREDRYA 176
>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
gi:3928758 contains Pfam profile PF04055: radical SAM
domain protein
Length = 374
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 1 RLRKEFAPFGTITSAKVMLEDGRS 72
R+ KE+AP GT+T VML G +
Sbjct: 260 RMAKEYAPAGTLTKTSVMLGCGET 283
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 268 FQPSSAGGYFVPTIPPAQRFYGPAQMPQIRPTP-RWTAQPPVRPSTQTPASAYA 426
F + YF + PP + Y P + + P P + + PPV S P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYS 70
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 268 FQPSSAGGYFVPTIPPAQRFYGPAQMPQIRPTP-RWTAQPPVRPSTQTPASAYA 426
F + YF + PP + Y P + + P P + + PPV S P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYS 70
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 85 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 183
FV F +A KA+ MNG+++ KP+ + ++
Sbjct: 223 FVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 423
P+ PP Y P P P P PPV PS P+ Y
Sbjct: 610 PSPPPPSPLYYPPVTPS-PPPPSPVYYPPVTPSPPPPSPVY 649
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 423
P+ PP Y P P P P PPV PS P+ Y
Sbjct: 625 PSPPPPSPVYYPPVTPS-PPPPSPVYYPPVTPSPPPPSPVY 664
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 313 PAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAY 423
P+ R Y P P + +P A PP P + +P Y
Sbjct: 434 PSVRAYSPPPPPYSKMSPSVRAYPPPPPPSPSPPPPY 470
>At4g11590.1 68417.m01857 F-box family protein contains weak hit to
Pfam PF00646: F-box domain
Length = 397
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 312 SCTTLLWSSTNAANTTY-TPMDCPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYF 488
+C + S +++ T+Y + + CP +S+ GL + L + +TG T
Sbjct: 92 NCEDWYFFSLSSSTTSYLSRVTCPFPDYVHYSHYVNGLISHGYGLEKFITNPSTGKSTVL 151
Query: 489 SRSKTNHRTTRC 524
R +TN + +C
Sbjct: 152 GRVQTNSKVAQC 163
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 180
+R F +G++ ++ M + R++G F+ +SPEEA A+ + + L V A
Sbjct: 110 IRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYA 169
Query: 181 QRKEDR 198
+ K+ +
Sbjct: 170 KTKKKK 175
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIV 150
L FA G + S +++E S+GF FV SS ++A + + +N ++
Sbjct: 88 LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVL 138
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEMNGRIV 150
L FA G + S +++E S+GF FV SS ++A + + +N ++
Sbjct: 87 LEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVL 137
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/58 (22%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 171
LR+ + +G I + +++ + G S+G+GFV + + +E +A + + ++ + + V
Sbjct: 80 LREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIV 137
>At2g21120.1 68415.m02506 expressed protein
Length = 328
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 322 VVQEVWWEQSILLHYLVGISDPFVAYAYLPCVACT 218
+++ +WW + + +VG + FVAY Y P V T
Sbjct: 48 LLEPLWWAGMVTM--IVGEAANFVAYIYAPAVLVT 80
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 150
L FA G +T ++L+ S+GFGF+ S +A + + ++ ++
Sbjct: 61 LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVL 111
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCF--SSPEEATKAVTEMNG 141
L K F+P GT+ + + + GRS F ++ F SS TK + NG
Sbjct: 26 LLKIFSPMGTVDAVEFVRTKGRS--FAYIDFSPSSTNSLTKLFSTYNG 71
>At3g49760.1 68416.m05440 bZIP transcription factor family protein
similar to bZIP transcription factor GI:1769891 from
[Arabidopsis thaliana]
Length = 156
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 404 KHLHRLTQICNHPTVLHQELQHRLHYVLL*EQDQSQDNKVLL 529
KHL ++ N + +QEL+++L YVL Q +N LL
Sbjct: 93 KHLEEMSIQLNQLKIQNQELKNQLRYVLYHCQRTKMENDRLL 134
>At1g47660.1 68414.m05295 hypothetical protein
Length = 275
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 334 PAQMPQIRPTPRWTAQPPVRPSTQTPASA 420
P P P R T PPV P+T PA A
Sbjct: 30 PPARPTTPPPARPTTPPPVWPTTPPPAGA 58
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 61 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 204
DG++ G FV F + EEA +A+ + + +G++ + + R+E R+A
Sbjct: 237 DGKATGEAFVEFETGEEARRAMAK-DKMSIGSRYVELFPTTREEARRA 283
>At5g62210.1 68418.m07811 embryo-specific protein-related contains
weak similarity to embryo-specific protein 3
(GI:3335171) [Arabidopsis thaliana]
Length = 223
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 295 FVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPS 399
F P+IPP Y P + P I P P PP PS
Sbjct: 167 FSPSIPPPSPPYFPPEPPSIPPPP-----PPSPPS 196
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 4 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 177
L E +G + K E G+SKG+ V F P A+ +NG +P V
Sbjct: 250 LEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEY 309
Query: 178 A 180
A
Sbjct: 310 A 310
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 301 PTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPSTQTP 411
P PP Q P P +P P QPP P + +P
Sbjct: 42 PGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSP 78
>At3g62780.1 68416.m07053 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 298
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 325 FYGPAQMPQIRPTPRWTAQPPVRP-STQTP 411
F GP ++P R+ AQ PVRP ST P
Sbjct: 134 FTGPVEVPTGGGCSRYAAQAPVRPVSTYRP 163
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 326
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +3
Query: 375 CPTTCKTKHSNTCIGLRKYATTLPSSTKSSNTGCITYFS-RSKTNHRT 515
CPT + C+ L K A +L K + GC F SK H T
Sbjct: 95 CPTCRQELGDIRCLALEKVAESLELPCKHMSLGCPEIFPYYSKLKHET 142
>At3g55690.1 68416.m06187 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 293
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 378 PTTCKTKHSNTCIGL-RKYATTLPSSTKSSNTGCITYFSRSK 500
PT K+ + T + L RKY+ S K S GC+ ++ K
Sbjct: 206 PTAVKSPSTGTGVFLPRKYSNPSDSPKKKSGDGCVKVVNQQK 247
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 274 PSSAGGYFVPTIPPAQRFYGPAQMPQIRPTPRWTAQPPVRPS 399
P S Y P PP + P P + P P + QP + PS
Sbjct: 417 PPSPPPYVYPPPPPPYVYPPPPSPPYVYPPPPPSPQPYMYPS 458
>At1g29970.1 68414.m03665 expressed protein similar to GI:3128228
from [Arabidopsis thaliana] (Nature 402 (6763), 761-768
(1999))
Length = 158
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 325 FYGPAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQ 435
F G A P P P++ P P T P AY N+Q
Sbjct: 24 FQGVANFPTPTPPPQF--MQPQHPITTFPGHAYQNLQ 58
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.132 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,895,910
Number of Sequences: 28952
Number of extensions: 284103
Number of successful extensions: 1438
Number of sequences better than 10.0: 184
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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