Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M23
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    33   0.042
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    28   1.2  
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    28   1.2  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   4.8  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   6.3  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   8.3  

>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 32.7 bits (71), Expect = 0.042
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 21  MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 155
           MFGK+  LL+ A  + +Q  +  +  P+  ++H  E ELL ++RV
Sbjct: 1   MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 150 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 326
           R+ RD    +  N DGTSGA   + F G  K +   +  S D+++  K  AA   VALD 
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499

Query: 327 V 329
           +
Sbjct: 500 L 500



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 306 AGVALDNVNGHGVSLTDIHIPG 371
           A  A+DN+   G SL  +H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 22  CSGRSSFYCLSLCASAFKAD 81
           C G SSFYCLS+    +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -2

Query: 313 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLELVN 137
           TP + APS      S   ++  + ++ P +  T +P+P + S  S  +P  SLR   L  
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358

Query: 136 SSGSS 122
            S  S
Sbjct: 359 KSAKS 363


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 334 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 188
           P T  S++  V++        S    + T+ ++ PA  + TP P  PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 336 HGVSLTDIHIPGFGDKVTAAGKVNLFHNDXHDITAKAFATR 458
           HG  L +I++ G+  K T    ++ FH +  +I A  + TR
Sbjct: 281 HGQKLRNINVVGWVKKKTRDIVLSPFHENGTNIKAPIWTTR 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,149
Number of Sequences: 5004
Number of extensions: 49602
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)