Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M22
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19226| Best HMM Match : I-set (HMM E-Value=0)                       32   0.39 
SB_327| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.8  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   3.7  
SB_32248| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               28   4.8  
SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)             28   4.8  
SB_47306| Best HMM Match : I-set (HMM E-Value=0)                       27   8.5  
SB_43263| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)              27   8.5  
SB_8547| Best HMM Match : Amelogenin (HMM E-Value=8.1)                 27   8.5  

>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1500

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 204 SYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIHHSYIPAACHTRETCCKAM 356
           S+ +P+ + S +       T+PL TPVP  ++ H Y  A C    T  + +
Sbjct: 208 SHQYPYANCSPYYTSTRMLTVPLITPVPLFLLLHQYPYANCSPYHTSTRML 258


>SB_327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 381 DGHQWWDIGYHFGVSSDGTVY 443
           DG  WW   Y  G S DGTV+
Sbjct: 61  DGIDWWVASYTLGYSLDGTVW 81


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 164 WIRLHVHNNCHKQSNRQYI 108
           W++ H  NNCH +SN++ +
Sbjct: 481 WLQRHQRNNCHGESNKKAV 499


>SB_32248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 299 PPLLHTSGMPH*RDLL*SHEEYAELPYGRSSMVGYWIPFWRQQ 427
           P +    G+    D   S++EY+E  +   S +GY I  W Q+
Sbjct: 432 PAIASVHGLDFEADRELSYQEYSEATHSMGSAIGYRIKKWTQR 474


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/67 (20%), Positives = 27/67 (40%)
 Frame = +3

Query: 183  SVENEVPSYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIHHSYIPAACHTRETCCKAMRS 362
            +    V  Y      RSQ +         L  P P   +  +++   C  + TC  ++ +
Sbjct: 1067 NASGNVTEYSVYLAIRSQAAGHDIKDVAALSNP-PNAPVQLAFVRVYCGAQPTCTVSLAT 1125

Query: 363  MQNFHMD 383
            +Q+ H+D
Sbjct: 1126 LQSAHID 1132


>SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)
          Length = 186

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/67 (20%), Positives = 27/67 (40%)
 Frame = +3

Query: 183 SVENEVPSYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIHHSYIPAACHTRETCCKAMRS 362
           +    V  Y      RSQ +         L  P P   +  +++   C  + TC  ++ +
Sbjct: 14  NASGNVTEYSVYLAIRSQAAGHDIKDVAALSNP-PNAPVQLAFVRVYCGAQPTCTVSLAT 72

Query: 363 MQNFHMD 383
           +Q+ H+D
Sbjct: 73  LQSAHID 79


>SB_47306| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1260

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 428 AADAKMVSNIPPLMTVHMEVLHTPHGFTASLSSVA 324
           A +A+  S + PL+T  ++ L  P G TA+L   A
Sbjct: 125 AVEAEKPSEVAPLITEPLKSLEVPEGATATLECKA 159


>SB_43263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 384 GHQWWDIGYHFGVSSDGTVYEGRGWSTLGAHALHFNSVSIGICLIGD 524
           G  +W    +   SSD    E R    L  +  H+NSV I +CLI D
Sbjct: 57  GSPYWR--QYISASSDPPSTEYRLEYMLYLYRYHYNSVFISVCLIPD 101


>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 216 PFVSRSQWSARQPNQTLPLKTPVPYVVIHHSYIPAACHTRETC 344
           P V+ S  S R PNQ  P+  P P      S+ PA  H  + C
Sbjct: 552 PNVTISSQSPRSPNQVSPVLPPSP----RASHSPADTHGSQAC 590


>SB_8547| Best HMM Match : Amelogenin (HMM E-Value=8.1)
          Length = 201

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 508 MPMLTELKCSACAPKVDHPLPSYTVPSLLTPKWYPISHH 392
           +PM + +  S   P  ++P   Y  P +  P W  IS H
Sbjct: 67  IPMTSHMHASFMPPCEEYPWQQYHTPIVDYPGWSTISRH 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,193,875
Number of Sequences: 59808
Number of extensions: 425638
Number of successful extensions: 1358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)