Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M22
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical pr...    31   0.79 
AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    28   5.6  
U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical p...    27   7.4  
Z82259-5|CAB05125.2|  353|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    27   9.7  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    27   9.7  

>Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical
           protein F56H9.1 protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 60  YCNNRVLCIVLKVIMFNILSIGL--FVTIIMNVKAYPSIFSGESVENE 197
           YC+   LCI L +  F +L  G+   V  I N K++ S  +     NE
Sbjct: 258 YCSGDRLCITLSLFSFGVLIYGIDGLVMYIFNYKSFGSSVASREPTNE 305


>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 448 PSYTVPSLLTPKWYPIS 398
           PSY+VPS   PK YP++
Sbjct: 344 PSYSVPSYTAPKKYPVA 360


>U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical
           protein C43E11.11 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 291 HTVLEFSEARSGLVASHSTANDSRKESHMTELHFPLI 181
           HT LE     +GLV+S++++  SR + H  + H+P I
Sbjct: 613 HTELEVLAFLNGLVSSYNSSVISRGQQHYVD-HYPRI 648


>Z82259-5|CAB05125.2|  353|Caenorhabditis elegans Hypothetical
           protein C28D4.5 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 410 VSNIPPLMTVHMEVLHTPHGF 348
           V N PPL++ H ++LH  HGF
Sbjct: 103 VLNFPPLLS-HNDILHQYHGF 122


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 535 ETRQSPIRQMPMLTELKCSAC 473
           ET   P RQMP+L++ +C  C
Sbjct: 574 ETEPPPPRQMPVLSKHQCGVC 594


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 535 ETRQSPIRQMPMLTELKCSAC 473
           ET   P RQMP+L++ +C  C
Sbjct: 545 ETEPPPPRQMPVLSKHQCGVC 565


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 535 ETRQSPIRQMPMLTELKCSAC 473
           ET   P RQMP+L++ +C  C
Sbjct: 574 ETEPPPPRQMPVLSKHQCGVC 594


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,817
Number of Sequences: 27780
Number of extensions: 311539
Number of successful extensions: 865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)