Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M22
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25240.1 68417.m03632 multi-copper oxidase type I family prot...    33   0.11 
At5g66920.1 68418.m08435 multi-copper oxidase type I family prot...    31   0.74 
At5g51480.1 68418.m06385 multi-copper oxidase type I family prot...    31   0.74 
At1g75790.1 68414.m08803 multi-copper oxidase type I family prot...    31   0.74 
At4g28090.1 68417.m04030 multi-copper oxidase type I family prot...    28   5.2  
At3g24150.1 68416.m03032 expressed protein                             27   6.9  
At1g44350.1 68414.m05110 IAA-amino acid hydrolase 6, putative (I...    27   6.9  
At2g15750.1 68415.m01803 hypothetical protein                          27   9.1  
At1g52780.1 68414.m05966 expressed protein                             27   9.1  

>At4g25240.1 68417.m03632 multi-copper oxidase type I family protein
           pollen-specific protein precursor -Nicotiana tabacum,
           PID:g19902; contains Pfam profile: PF00394 Multicopper
           oxidase
          Length = 589

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +3

Query: 363 MQNFHMDGHQWWDIGYHFGVSSDGTVYEGRGW-----STLGAHALHFNSVSIGICLIGDW 527
           +Q+FH+DG+ ++ +G  FG+ S+        W     ST+  +   + +V I +  +G W
Sbjct: 451 IQSFHVDGYSFFVVGMDFGIWSEDKKGSYNNWDAISRSTIEVYPGGWTAVLISLDNVGVW 510

Query: 528 RVSLPPADQ 554
            + +   D+
Sbjct: 511 NIRVENLDR 519


>At5g66920.1 68418.m08435 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 546

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 300 HHSYIPAACHTRETCCKAMRSMQNFHMDGHQWWDIGYHFG 419
           HH ++       E      +SMQ++H+DG+ +W +G+  G
Sbjct: 424 HHDFLEIVFQNNE------KSMQSWHLDGYDFWVVGFGSG 457


>At5g51480.1 68418.m06385 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase;
           similar to pollen-specific protein
          Length = 592

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +3

Query: 363 MQNFHMDGHQWWDIGYHFGVSSDGTVYEGRGW-----STLGAHALHFNSVSIGICLIGDW 527
           +Q+FH+DG+ ++ +   FG+ S+        W     ST+  +   + +V I +  +G W
Sbjct: 451 IQSFHIDGYAFYVVAMDFGIWSEDRNSSYNNWDAVARSTVEVYPGAWTAVLISLDNVGVW 510

Query: 528 RVSLPPADQ 554
            + +   D+
Sbjct: 511 NIRVENLDR 519


>At1g75790.1 68414.m08803 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase
          Length = 545

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +3

Query: 363 MQNFHMDGHQWWDIGYHFGVSSDG-----TVYEGRGWSTLGAHALHFNSVSIGICLIGDW 527
           ++++H+DG+ ++ +GY FG  S+       + +    ST+  +   + ++ I +   G W
Sbjct: 436 LESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMW 495

Query: 528 RVSLPPADQ 554
            V    A+Q
Sbjct: 496 NVRSQKAEQ 504


>At4g28090.1 68417.m04030 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 547

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 363 MQNFHMDGHQWWDIGYHFGVSS 428
           +Q++H+DG+ +W +G + G+ S
Sbjct: 435 VQSYHLDGYNFWVVGINKGIWS 456


>At3g24150.1 68416.m03032 expressed protein
          Length = 343

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 162 PSIFSGESVENEVPSYDFPFVSRSQWSARQPNQTLPLKTPV 284
           P I    S     PSY   +  ++Q S+ +P+QT+    PV
Sbjct: 137 PKIQEPVSASTNEPSYHHEYRQQAQQSSTKPSQTVQAAVPV 177


>At1g44350.1 68414.m05110 IAA-amino acid hydrolase 6, putative
           (ILL6) / IAA-Ala hydrolase, putative virtually identical
           to gr1-protein from [Arabidopsis thaliana] GI:3559811;
           similar to IAA-amino acid hydrolase GI:3421384 from
           [Arabidopsis thaliana]; contains TIGRfam profile
           TIGR01891: amidohydrolase; contains Pfam profile
           PF01546: Peptidase family M20/M25/M40;  identical to
           cDNA IAA-amino acid conjugate hydrolase-like protein
           (ILL6), partial cds GI:17978837
          Length = 464

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 353 GFTASLSSVACRWYVRVVDNHIRYWSFQRQGLVWLPRTPLRTTHE 219
           G  A + S  CR + +   + I   ++Q   + WL R   RT HE
Sbjct: 55  GLPAHVGSDECRVWTKACSDEILRLTYQPDNVAWLKRV-RRTIHE 98


>At2g15750.1 68415.m01803 hypothetical protein 
          Length = 280

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +3

Query: 204 SYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIH-HSYIPAAC 326
           +Y        +W +    Q+LP + P P V+   HS  P  C
Sbjct: 141 AYLLAITRAKEWQSANQTQSLPARIPDPLVIPRSHSIDPVCC 182


>At1g52780.1 68414.m05966 expressed protein 
          Length = 1059

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +3

Query: 45  LLFKKYCNNRVLCIVLKVIMFNILSIGLFVTIIMNVKAYPSIFSGESVENEVPSYDFPFV 224
           LLF    N   L  V  ++M  + ++G  + +I   +A     +  +   E PSYD   +
Sbjct: 759 LLFYVSSNTDSLPFV-SLVMLGVQALGYSLPLITGAEALFKRKAASATTYETPSYD---L 814

Query: 225 SRSQW 239
            RSQW
Sbjct: 815 QRSQW 819


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,294,366
Number of Sequences: 28952
Number of extensions: 289439
Number of successful extensions: 849
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)