Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M21
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893... 29 2.0
12_02_1265 - 27435096-27437675 29 2.7
07_03_0041 + 12727924-12728250 29 2.7
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 29 2.7
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922... 29 3.6
01_01_0112 - 838809-839748,839781-839908,840203-840274,840306-84... 28 6.2
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 27 8.2
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 27 8.2
>02_02_0322 -
8938101-8938149,8938235-8938458,8938545-8938605,
8938724-8940761,8940797-8940908,8942037-8942047,
8942293-8942443
Length = 881
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +1
Query: 169 NEPRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPG 345
+ PRA TGD I K+N R+ N Y + K+ + GP +PG
Sbjct: 710 DHPRAVKTGDSFFTNLIKKSFKINNGMGNGRAKVFINGYPISDRAVRKAEKIAGPIYPG 768
>12_02_1265 - 27435096-27437675
Length = 859
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 172 EPRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQST 327
EP + +T +HP P ++ + + P+ + ARS+S G +T + +ST
Sbjct: 99 EPASGNTSNHPRTPQVLGNDYVQPSKQTARSISHSAIAGAGVYTELVNLKST 150
>07_03_0041 + 12727924-12728250
Length = 108
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +1
Query: 124 KRSADDEPLWLFKDNNEPRAPSTGDH--PVLPSIIDDIKLNPNTRYARSLSTP 276
K S PLW KD+ T D PVL +D PN R+ SL+TP
Sbjct: 6 KASPSSPPLWRQKDSLFRWVAITKDPLGPVLEQCLDIPTTLPNLRHNASLNTP 58
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 344 VTTDVMYVVSIRVAVSIMVEALRRLVVARTPAKLIQATTAVMLSL 478
V T ++ V+I AV V A+RR +ARTPA L ++ L
Sbjct: 54 VATQLVVTVAIAAAV-YSVPAIRRFFLARTPASLAAFVLVIVAPL 97
>06_03_0672 +
23359510-23361253,23389969-23390203,23392078-23392234,
23392535-23392597
Length = 732
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 21 GVVCRRNDMLEKRFTCYLSYISSTAHSRPCD 113
G+ C D+L+ TCY+++++S++ S CD
Sbjct: 468 GISC---DLLDDSATCYIAHVASSSISTSCD 495
>01_01_0112 -
838809-839748,839781-839908,840203-840274,840306-840374,
840634-840698,840732-840907,841006-841757
Length = 733
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 111 HRADCGPWTICRINNR*ISSPTCRFGD 31
HR DC P+T R++N +SSP R GD
Sbjct: 38 HRHDCLPFTCGRLSN--VSSPFRRRGD 62
>07_03_1778 +
29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 27.5 bits (58), Expect = 8.2
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Frame = +1
Query: 64 PVIYPTY--RPRPTVGPVTMRAKRSADDEPLWLFKDNNEPRAPSTGDH-----PVLPSII 222
P++ PT P PTV DDE + NN + G P S
Sbjct: 103 PLVRPTTPRSPVPTVSAFETIEDSDDDDENIAPDAKNNAVSLLTNGTIGSDPLPGKASQN 162
Query: 223 DDIKLNPNTRYARSLSTPNKYHGGSHT-ISKSSQSTGPTHPGYNRRHVRSFDS 378
D K P+T RS S HG H ++ P H ++R ++ + ++
Sbjct: 163 GDTKPVPSTNMIRSQSATGSLHGAQHNPVAADILRKEPEHETFSRINITAVET 215
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 27.5 bits (58), Expect = 8.2
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Frame = +1
Query: 61 LPVIYPTYRPRPTVGPVTMRAKRSADDEPLWLFKDNNEPRAPSTG-DHPVLPSIIDDIK- 234
+PV +Y PR T+ P + L + ++N + R PS P LPS D++
Sbjct: 67 MPVAPCSYVPRYTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNFQDLRP 126
Query: 235 -LN--PNTRYARSLSTPNKYHGG--SHTISKSSQSTGPTHPGYNRRH 360
N P Y ++ S N + ++ + + + P +P Y H
Sbjct: 127 MCNGPPFMSYGQTASNRNVLYQNLTPYSFNAWASNNMPRNPVYTSYH 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,692,826
Number of Sequences: 37544
Number of extensions: 298710
Number of successful extensions: 807
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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