Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M20
         (77 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    24   3.1  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         23   4.1  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    22   9.5  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 1   LVSYRLNQNKYGDML 45
           LV+  LNQN +GD+L
Sbjct: 399 LVTNHLNQNSFGDLL 413


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 47 CNMSPYLFWLRR 12
          CN S  LFWLR+
Sbjct: 52 CNFSKSLFWLRK 63


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 6   LVPPQPEQVRRHVAPRVR 59
           L PP P  +R + APR R
Sbjct: 86  LAPPSPSPLRLNEAPRRR 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,299
Number of Sequences: 5004
Number of extensions: 1829
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 2,362,478
effective HSP length: 7
effective length of database: 2,327,450
effective search space used: 41894100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)