Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M20
         (77 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511...    25   8.4  
09_06_0299 - 22119427-22119477,22119823-22120193,22120503-22120914     25   8.4  

>09_06_0303 -
           22149214-22149474,22150099-22150236,22150856-22151100,
           22151344-22151809
          Length = 369

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 4   VSYRLNQNKYGDMLHHEFVQAMNG 75
           +SY L  NK+ DM + EF     G
Sbjct: 86  MSYTLGLNKFSDMSYEEFAAKYTG 109


>09_06_0299 - 22119427-22119477,22119823-22120193,22120503-22120914
          Length = 277

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 4   VSYRLNQNKYGDMLHHEFVQAMNG 75
           ++Y+L  NK+ DM   EFV    G
Sbjct: 69  MTYKLGLNKFADMTLEEFVAKYTG 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,123
Number of Sequences: 37544
Number of extensions: 16110
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 14,793,348
effective HSP length: 7
effective length of database: 14,530,540
effective search space used: 261549720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)