Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M20
         (77 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50260.1 68418.m06224 cysteine proteinase, putative similar t...    27   2.3  
At3g48350.1 68416.m05277 cysteine proteinase, putative similar t...    26   3.0  
At4g11320.1 68417.m01828 cysteine proteinase, putative contains ...    25   5.2  
At3g48340.1 68416.m05276 cysteine proteinase, putative similar t...    25   6.9  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    25   6.9  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    25   6.9  

>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor CysEP GI:2944446 from
           [Ricinus communis]
          Length = 361

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 7   SYRLNQNKYGDMLHHEFVQAMNG 75
           SY+L  NK+GDM   EF +   G
Sbjct: 77  SYKLKLNKFGDMTSEEFRRTYAG 99


>At3g48350.1 68416.m05277 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor [Ricinus communis]
           GI:2944446; contains Pfam profile PF00112: Papain family
           cysteine protease
          Length = 364

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 10  YRLNQNKYGDMLHHEFVQAMNG 75
           Y+L  N++ D+ HHEF  +  G
Sbjct: 78  YKLKINRFADITHHEFRSSYAG 99


>At4g11320.1 68417.m01828 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 371

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 4   VSYRLNQNKYGDMLHHEFVQAMNG 75
           +SYRL  N++ D+  HE+ +  +G
Sbjct: 95  LSYRLGLNRFADLSLHEYGEICHG 118


>At3g48340.1 68416.m05276 cysteine proteinase, putative similar to
           cysteine endopeptidase precursor [Ricinus communis]
           GI:2944446; contains Pfam profile PF00112: Papain family
           cysteine protease
          Length = 351

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 7   SYRLNQNKYGDMLHHEFVQAMNG 75
           SY+L  NK+ D+  +EF  A  G
Sbjct: 77  SYKLKLNKFADLTINEFKNAYTG 99


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 71  FIACTNSWCNMSPYLFWLRRYE 6
           ++ C  S  N   YLFW +RY+
Sbjct: 534 WLMCVLSVVNFLHYLFWAKRYK 555


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 71  FIACTNSWCNMSPYLFWLRRYE 6
           ++ C  S  N   YLFW +RY+
Sbjct: 538 WLMCVLSVVNFLHYLFWAKRYK 559


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,452,513
Number of Sequences: 28952
Number of extensions: 10639
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 12,070,560
effective HSP length: 7
effective length of database: 11,867,896
effective search space used: 213622128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)