Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M19
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   0.69 
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.9  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    24   8.5  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    24   8.5  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.5 bits (58), Expect = 0.69
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 180 DGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAVTAGLVYDNVNRHGATLTNTHIPG 359
           D +SGA++ V  T     +    GS+  T+ I     T+G V + V     T+T T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSGTV-EVVEPTAGTVTETIISG 850


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 299 SSCNGPQFNLVSEINGAKSTELVIFVSS 216
           S+CNG   +L  E NGA S+   +  SS
Sbjct: 44  SACNGNSHSLKHETNGASSSNNNVAKSS 71


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 195 HLRFHQN*L*VHPLAGAPWNWSTAP 121
           HL F++N +  HPLA      STAP
Sbjct: 115 HLPFYENYIRNHPLAIEALQKSTAP 139


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 273 IKLGAVT--AGLVYDNVNRHGATLTNTHIPG 359
           + L AVT  A    DN+   GA+L + H+PG
Sbjct: 169 LPLEAVTTIAKAAIDNLVSIGASLAHVHVPG 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,083
Number of Sequences: 5004
Number of extensions: 20351
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)