Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M19
         (365 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.50 
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          27   3.5  
SB_23455| Best HMM Match : zf-Sec23_Sec24 (HMM E-Value=7.5)            27   6.2  
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_50684| Best HMM Match : Toxin_trans (HMM E-Value=4.8)               26   8.1  

>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 280  NLIWLVRSTEPRALSL*FSFPVIGTLTIAPEVPSELIVS 164
            NL  +  S  PR LS    FP +G+ TI P   S +IVS
Sbjct: 1187 NLDGVDSSVMPRELSQVLRFPFLGSFTIRPLAQSSVIVS 1225


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 271 WLVRSTEPRALSL*FSFPVIGTLTIAPEVPSELIV 167
           W+V ++EP  LS      +I T +I P  P   I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506


>SB_23455| Best HMM Match : zf-Sec23_Sec24 (HMM E-Value=7.5)
          Length = 283

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 353 NMSVCEG-SSVTVDIIVN*SSCNGPQFNLVSEINGAKSTELVIFVSSYRYLDH 198
           N  VC     V  DI++N SS     + +V         ++VI  SS R+LDH
Sbjct: 23  NRIVCRAFQQVYADIVINESSIRHLDYCVVCRPFQQVYVDIVINDSSIRHLDH 75



 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 326 VTVDIIVN*SSCNGPQFNLVSEINGAKSTELVIFVSSYRYLDH 198
           V VDI++N SS       +V         ++VI  SS R+LDH
Sbjct: 59  VYVDIVINDSSIRHLDHRVVCRAFQQVYADIVINDSSIRHLDH 101


>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 356 RNMSVCEGSSVTVDIIV 306
           RN SVC G S+T+++I+
Sbjct: 405 RNWSVCTGKSITLEVIL 421


>SB_50684| Best HMM Match : Toxin_trans (HMM E-Value=4.8)
          Length = 346

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 129 WTSSRVRRXAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKL 281
           W   R +  A    +  D T G ++K+P   +  +K S LG    TN+ ++
Sbjct: 48  WKYGRQKMAARRTAMIEDNT-GTVLKIPKKSSAGYKTSKLGMFLATNKRRI 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,762,001
Number of Sequences: 59808
Number of extensions: 159778
Number of successful extensions: 324
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)