Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M19
         (365 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43990.2 68418.m05382 SET domain-containing protein identical...    31   0.31 
At5g43990.1 68418.m05383 SET domain-containing protein identical...    31   0.31 
At3g05150.1 68416.m00559 sugar transporter family protein simila...    28   1.7  

>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +3

Query: 132 TSSRVRRXAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAVTAGLVYD 311
           ++  V   AGE    +DGT+  +    +    +HKL+A  +++    ++L +  +G V  
Sbjct: 219 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 276

Query: 312 NVNRHGAT-LTNTHIPGI 362
           N++   AT  +N H+P +
Sbjct: 277 NLSFAPATGGSNPHLPSM 294


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +3

Query: 132 TSSRVRRXAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAVTAGLVYD 311
           ++  V   AGE    +DGT+  +    +    +HKL+A  +++    ++L +  +G V  
Sbjct: 196 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 253

Query: 312 NVNRHGAT-LTNTHIPGI 362
           N++   AT  +N H+P +
Sbjct: 254 NLSFAPATGGSNPHLPSM 271


>At3g05150.1 68416.m00559 sugar transporter family protein similar
           to sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 470

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 234 KLSALGSVDLTNQIKLGAVTAGLVYDNVNRHGATLTNTHIPGIG 365
           + S  GS+ L     LGA+T+G + D + R GA   ++ I  IG
Sbjct: 73  QFSVFGSI-LNMGAVLGAITSGKISDFIGRKGAMRLSSVISAIG 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,802,434
Number of Sequences: 28952
Number of extensions: 110549
Number of successful extensions: 235
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)