Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M18
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    85   1e-17
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   3.7  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   6.4  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    25   6.4  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 38/46 (82%), Positives = 42/46 (91%)
 Frame = +2

Query: 449 FLFTSESVGEGHPDQMCDQISDAILDAHLKQDPNAKVACETVTKTG 586
           FLFTSESVGEGHPD++CDQISDAILDA LK DP +KVACET +KTG
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTG 50


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +3

Query: 339  GYFCELTLNSECRRHQKL*MDMQKLTDTVMIWKMALCFCLHPNLSER 479
            G F   + N E  RH     D   L DT M  K+ L F    N+SER
Sbjct: 983  GAFPNDSKNKELNRHFLKVDDSAPLDDTFMSKKVKLDFSSDSNVSER 1029


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 236 LKIFVLWRLTDLINIGVFSRQASFPQC*FRGKSFG 340
           L IF+ +  +DL N+GV S  A+      +GK FG
Sbjct: 534 LDIFI-YSPSDLSNVGVLSNTAALISAVSKGKRFG 567


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 422 SYDMEDGSVFLFTSESVGEGHPDQMCDQISDAIL 523
           S+D E  S+F   S+SV E      CD+ SD  L
Sbjct: 657 SFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 432 WKMALCFCLHPNLSERVIQTKCAI 503
           WK     CL+ N+ ++ ++T+C I
Sbjct: 41  WKRCKNVCLYMNMPKKEVRTRCLI 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,510
Number of Sequences: 5004
Number of extensions: 50763
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)