Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M18
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2...    83   1e-16
At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati...    83   1e-16
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati...    83   1e-16
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1...    83   1e-16
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1...    83   1e-16
At5g37410.1 68418.m04500 hypothetical protein contains Pfam PF04...    31   0.44 
At1g48910.1 68414.m05479 flavin-containing monooxygenase family ...    29   2.4  
At5g58330.3 68418.m07302 malate dehydrogenase [NADP], chloroplas...    29   3.1  
At5g58330.2 68418.m07304 malate dehydrogenase [NADP], chloroplas...    29   3.1  
At5g58330.1 68418.m07303 malate dehydrogenase [NADP], chloroplas...    29   3.1  
At5g40450.1 68418.m04905 expressed protein                             27   9.6  
At4g32010.1 68417.m04557 transcriptional factor B3 family protei...    27   9.6  
At3g16540.1 68416.m02112 DegP protease, putative contains simila...    27   9.6  
At1g03960.2 68414.m00382 calcium-binding EF hand family protein ...    27   9.6  
At1g03960.1 68414.m00381 calcium-binding EF hand family protein ...    27   9.6  

>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
           identical to S-adenosylmethionine synthetase 2
           (Methionine adenosyltransferase 2, AdoMet synthetase 2)
           [Arabidopsis thaliana] SWISS-PROT:P17562
          Length = 393

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 36/45 (80%), Positives = 42/45 (93%)
 Frame = +2

Query: 449 FLFTSESVGEGHPDQMCDQISDAILDAHLKQDPNAKVACETVTKT 583
           FLFTSESV EGHPD++CDQISDA+LDA L+QDP++KVACET TKT
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKT 48


>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 2 (Methionine
           adenosyltransferase 2, AdoMet synthetase 2)
           [Catharanthus roseus] SWISS-PROT:Q96552
          Length = 393

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 37/45 (82%), Positives = 41/45 (91%)
 Frame = +2

Query: 449 FLFTSESVGEGHPDQMCDQISDAILDAHLKQDPNAKVACETVTKT 583
           FLFTSESV EGHPD++CDQISDAILDA L+QDP +KVACET TKT
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKT 48


>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 3 (Methionine
           adenosyltransferase 3, AdoMet synthetase 3)
           [Lycopersicon esculentum] SWISS-PROT:P43282
          Length = 390

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 37/45 (82%), Positives = 41/45 (91%)
 Frame = +2

Query: 449 FLFTSESVGEGHPDQMCDQISDAILDAHLKQDPNAKVACETVTKT 583
           FLFTSESV EGHPD++CDQISDAILDA L+QDP +KVACET TKT
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKT 48


>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 36/45 (80%), Positives = 42/45 (93%)
 Frame = +2

Query: 449 FLFTSESVGEGHPDQMCDQISDAILDAHLKQDPNAKVACETVTKT 583
           FLFTSESV EGHPD++CDQISDA+LDA L+QDP++KVACET TKT
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKT 48


>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 36/45 (80%), Positives = 42/45 (93%)
 Frame = +2

Query: 449 FLFTSESVGEGHPDQMCDQISDAILDAHLKQDPNAKVACETVTKT 583
           FLFTSESV EGHPD++CDQISDA+LDA L+QDP++KVACET TKT
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKT 48


>At5g37410.1 68418.m04500 hypothetical protein contains Pfam
           PF04510: Family of unknown function (DUF577);  common
           family comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 615

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +2

Query: 35  VAYQKYLNNIS*KLINHKCLFSGLVTKVKASQLLVIIIK*QIR-LT*SKQNIVTNSRREL 211
           +AY K +N++  K +  + +  GLV +  A + + II+K Q+   + S+  +V      L
Sbjct: 512 IAY-KMINSV--KELVERGMEVGLVRR--AFRDVEIIVKDQLEWYSTSEYKLVKGLLWRL 566

Query: 212 GAQQDIYWLKIFVLWRLTDLINIGVFSRQASFPQ 313
            A + + W   FVLWR+  +I+ GV   +   PQ
Sbjct: 567 YAIKGMRWESKFVLWRINVIIDRGVKEEEKELPQ 600


>At1g48910.1 68414.m05479 flavin-containing monooxygenase family
           protein / FMO family protein similar to flavin
           monoxygenase-like protein floozy [Petunia x hybrida]
           GI:15010541
          Length = 383

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = +2

Query: 266 DLINIGVFS-RQASFPQC*FRGKSFGLFL*ANSKFRMPETSKIMNGYAKTNGHSYDMEDG 442
           DL   G+F  +Q  F    F GK+  + +    K R  E   I  G    NG +   E+G
Sbjct: 241 DLSKYGLFRPKQGPFATKLFTGKAPVIDVGTVEKIRDGEIQVINGGIGSINGKTLTFENG 300

Query: 443 SVFLFTSESVGEGHPDQMCDQISD 514
               F +     G+   +C+ + D
Sbjct: 301 HKQDFDAIVFATGYKSSVCNWLED 324


>At5g58330.3 68418.m07302 malate dehydrogenase [NADP], chloroplast,
           putative strong similiarity to chloroplast
           NADP-dependent malate dehydrogenase (EC 1.1.1.82)
           SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
           SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
           {Flaveria bidentis}, [Flaveria trinervia] GI:726334,
           SP|P17606I {Sorghum bicolor}; contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 334

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 410 TNGHSYDMEDGSVFLFTSESVGEGHPDQMCD-QISDAILDAHLKQDPNAKVACETVTK-T 583
           T+G+ Y +E+G VF     S G+G  + + D +I D +     K +         V   T
Sbjct: 255 TDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYLRQRIAKSEAELLAEKRCVAHLT 314

Query: 584 GNGIA 598
           G GIA
Sbjct: 315 GEGIA 319


>At5g58330.2 68418.m07304 malate dehydrogenase [NADP], chloroplast,
           putative strong similiarity to chloroplast
           NADP-dependent malate dehydrogenase (EC 1.1.1.82)
           SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
           SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
           {Flaveria bidentis}, [Flaveria trinervia] GI:726334,
           SP|P17606I {Sorghum bicolor}; contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 442

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 410 TNGHSYDMEDGSVFLFTSESVGEGHPDQMCD-QISDAILDAHLKQDPNAKVACETVTK-T 583
           T+G+ Y +E+G VF     S G+G  + + D +I D +     K +         V   T
Sbjct: 363 TDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYLRQRIAKSEAELLAEKRCVAHLT 422

Query: 584 GNGIA 598
           G GIA
Sbjct: 423 GEGIA 427


>At5g58330.1 68418.m07303 malate dehydrogenase [NADP], chloroplast,
           putative strong similiarity to chloroplast
           NADP-dependent malate dehydrogenase (EC 1.1.1.82)
           SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
           SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
           {Flaveria bidentis}, [Flaveria trinervia] GI:726334,
           SP|P17606I {Sorghum bicolor}; contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 443

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 410 TNGHSYDMEDGSVFLFTSESVGEGHPDQMCD-QISDAILDAHLKQDPNAKVACETVTK-T 583
           T+G+ Y +E+G VF     S G+G  + + D +I D +     K +         V   T
Sbjct: 364 TDGNPYGIEEGLVFSMPCRSKGDGDYELVKDVEIDDYLRQRIAKSEAELLAEKRCVAHLT 423

Query: 584 GNGIA 598
           G GIA
Sbjct: 424 GEGIA 428


>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 434  EDGSVFLFTSESVGEGHPDQMCDQISDA 517
            E+ S+ + T ESVGE  P +  D+I DA
Sbjct: 1955 EERSISVETEESVGETKPKEHEDEIRDA 1982


>At4g32010.1 68417.m04557 transcriptional factor B3 family protein
           low similarity to FUSCA3 [Arabidopsis thaliana]
           GI:3582518, VIVIPAROUS1 protein [Triticum aestivum]
           GI:7801376; contains Pfam profile PF02362: B3 DNA
           binding domain
          Length = 780

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = -1

Query: 378 SGILNLELAHKNNPKDFP 325
           SG++++ ++H++N KDFP
Sbjct: 97  SGLISMNVSHESNGKDFP 114


>At3g16540.1 68416.m02112 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 555

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 262 HRPYKYRRILAPGLFSTVLIQGEIFRVIFVS*L*IQNAGDIKNYEWICK 408
           H   +Y R   PGL S++        V+  S   +  AG +  Y +IC+
Sbjct: 8   HTVGRYSRARVPGLLSSLFFYRSCNNVLTNSLPTVTTAGRVSRYGYICR 56


>At1g03960.2 68414.m00382 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 389

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = -3

Query: 337 ERFPPELTLWKRGLAREYA------DIYKVGEAPQDEYFEPID 227
           ER  P LT W R   REYA      D+ +V     D + EP++
Sbjct: 344 EREDPNLTEWDRFAQREYARLSMEEDVDEVSNGSADVWDEPLE 386


>At1g03960.1 68414.m00381 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 529

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = -3

Query: 337 ERFPPELTLWKRGLAREYA------DIYKVGEAPQDEYFEPID 227
           ER  P LT W R   REYA      D+ +V     D + EP++
Sbjct: 484 EREDPNLTEWDRFAQREYARLSMEEDVDEVSNGSADVWDEPLE 526


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,619,304
Number of Sequences: 28952
Number of extensions: 256488
Number of successful extensions: 553
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)