Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M17
         (210 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)                   27   2.3  
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)             26   4.1  
SB_41428| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)
          Length = 114

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 14 KVTVTGGGGFLGARLADYLLE 76
          KV VTGG G+ G+RL   L E
Sbjct: 13 KVVVTGGAGYFGSRLGYALSE 33


>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
          Length = 451

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 17  VTVTGGGGFLGARLADYLLE 76
           V VTGG G+LG+ L   LL+
Sbjct: 143 VLVTGGAGYLGSSLVPILLD 162


>SB_41428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 205 GDAGRGHVRGEXRDARVRMSLW*EGRLMHIRXQQRRDSQR 86
           G   RG+VRG  R   VR S     R+ ++R   RRD  R
Sbjct: 60  GSDRRGYVRGSDRRGHVRGS----DRMGYVRGSDRRDYAR 95


>SB_16495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 851

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 32  GGGFLGARLADYLLENECPLRVSALLXTDVHQPTLS 139
           GGG L   +A+   E +   R + LL    H PT++
Sbjct: 177 GGGILANEIAENFQETKTGHRKAKLLYYSAHYPTIT 212


>SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 803

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   NMKVTVTGGGGFLGARLADYLLENECPLRVSALL 109
           N +V      GF+  +  DYL+ N C L+ + ++
Sbjct: 312 NRRVRKLSADGFIDDKTLDYLIINVCILKTTIMV 345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.133    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,311,744
Number of Sequences: 59808
Number of extensions: 50302
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 16,821,457
effective HSP length: 48
effective length of database: 13,950,673
effective search space used: 292964133
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)