Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M17
(210 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase fam... 38 0.001
At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase fam... 38 0.001
At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3... 37 0.002
At3g46440.1 68416.m05034 NAD-dependent epimerase/dehydratase fam... 37 0.002
At4g33360.1 68417.m04743 terpene cyclase/mutase-related low simi... 33 0.026
At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam... 30 0.18
At2g33590.1 68415.m04117 cinnamoyl-CoA reductase family similar ... 30 0.18
At3g53520.2 68416.m05910 NAD-dependent epimerase/dehydratase fam... 30 0.24
At3g53520.1 68416.m05909 NAD-dependent epimerase/dehydratase fam... 30 0.24
At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase fam... 29 0.32
At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar ... 29 0.32
At5g28840.1 68418.m03547 NAD-dependent epimerase/dehydratase fam... 29 0.42
At1g80820.1 68414.m09482 cinnamoyl-CoA reductase, putative ident... 28 0.74
At1g08200.1 68414.m00906 expressed protein 27 1.3
At2g27860.1 68415.m03377 expressed protein 27 1.7
At2g21280.1 68415.m02533 expressed protein similar to YfhF (GI:2... 27 1.7
At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar ... 26 3.0
At2g45400.1 68415.m05646 dihydroflavonol 4-reductase family / di... 25 5.2
At1g68540.1 68414.m07830 oxidoreductase family protein similar t... 25 5.2
At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro... 25 5.2
>At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +2
Query: 8 NMKVTVTGGGGFLGARLADYLLENE 82
NM++ VTGG GF+G+ L D L++NE
Sbjct: 30 NMRILVTGGAGFIGSHLVDKLMQNE 54
>At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +2
Query: 8 NMKVTVTGGGGFLGARLADYLLENE 82
NM++ VTGG GF+G+ L D L++NE
Sbjct: 30 NMRILVTGGAGFIGSHLVDKLMQNE 54
>At5g59290.1 68418.m07429 UDP-glucuronic acid decarboxylase (UXS3)
identical to UDP-glucuronic acid decarboxylase
[Arabidopsis thaliana] GI:14595666; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family; identical to cDNA UDP-glucuronic acid
decarboxylase (UXS3) GI:14595665
Length = 342
Score = 37.1 bits (82), Expect = 0.002
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 8 NMKVTVTGGGGFLGARLADYLLENE 82
NM++ ++GG GF+G+ L D L+ENE
Sbjct: 29 NMRILISGGAGFIGSHLVDKLMENE 53
>At3g46440.1 68416.m05034 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 341
Score = 37.1 bits (82), Expect = 0.002
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 8 NMKVTVTGGGGFLGARLADYLLENE 82
NM++ ++GG GF+G+ L D L+ENE
Sbjct: 28 NMRILISGGAGFIGSHLVDKLMENE 52
>At4g33360.1 68417.m04743 terpene cyclase/mutase-related low
similarity to squalene-hopene cyclase from Zymomonas
mobilis [SP|P33990]
Length = 344
Score = 33.1 bits (72), Expect = 0.026
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 2 SRNMKVTVTGGGGFLGARLADYLLENECPLRVSALLXTDV 121
+ NMK+ VTG G+LGARL LL +R +D+
Sbjct: 10 TENMKILVTGSTGYLGARLCHVLLRRGHSVRALVRRTSDL 49
>At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains non-consensus CA
donor splice site at exon 1 and TA acceptor splice site
at exon 2
Length = 445
Score = 30.3 bits (65), Expect = 0.18
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 5 RNMKVTVTGGGGFLGARLADYLL 73
+ ++V VTGG GF+G+ L D L+
Sbjct: 117 KGLRVVVTGGAGFVGSHLVDRLM 139
>At2g33590.1 68415.m04117 cinnamoyl-CoA reductase family similar
to cinnamoyl-CoA reductase from Pinus taeda
[GI:17978649], Eucalyptus gunnii [GI:2058311]
Length = 321
Score = 30.3 bits (65), Expect = 0.18
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 14 KVTVTGGGGFLGARLADYLLENE 82
KV VTG GGFLG+ + D LL +
Sbjct: 8 KVCVTGAGGFLGSWVVDLLLSKD 30
>At3g53520.2 68416.m05910 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 426
Score = 29.9 bits (64), Expect = 0.24
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 5 RNMKVTVTGGGGFLGARLADYLL 73
+ +++ VTGG GF+G+ L D L+
Sbjct: 118 KRLRIVVTGGAGFVGSHLVDKLI 140
>At3g53520.1 68416.m05909 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 345
Score = 29.9 bits (64), Expect = 0.24
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 5 RNMKVTVTGGGGFLGARLADYLL 73
+ +++ VTGG GF+G+ L D L+
Sbjct: 118 KRLRIVVTGGAGFVGSHLVDKLI 140
>At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family; contains non-consensus AT
donor splice site at exon 1 and non-consensus AC
acceptor splice site at exon 2
Length = 443
Score = 29.5 bits (63), Expect = 0.32
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 11 MKVTVTGGGGFLGARLADYLL 73
++V VTGG GF+G+ L D L+
Sbjct: 121 LRVVVTGGAGFVGSHLVDRLM 141
>At2g33600.1 68415.m04118 cinnamoyl-CoA reductase family similar
to cinnamoyl-CoA reductase from Pinus taeda
[GI:17978649], Eucalyptus gunnii [GI:2058311]
Length = 321
Score = 29.5 bits (63), Expect = 0.32
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 14 KVTVTGGGGFLGARLADYLLENE 82
KV VTG GGFLG+ + ++LL +
Sbjct: 8 KVCVTGAGGFLGSWVVNHLLSRD 30
>At5g28840.1 68418.m03547 NAD-dependent epimerase/dehydratase
family protein similar to sugar epimerase BlmG from
Streptomyces verticillus GI:9937230; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 377
Score = 29.1 bits (62), Expect = 0.42
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 2 SRNMKVTVTGGGGFLGARLA 61
S N+K+++TG GGF+ + +A
Sbjct: 25 SENLKISITGAGGFIASHIA 44
>At1g80820.1 68414.m09482 cinnamoyl-CoA reductase, putative
identical to CCR2 (GI:12407990), similar to cinnamoyl
CoA reductase from Eucalyptus gunnii [GI:2058311]
Length = 332
Score = 28.3 bits (60), Expect = 0.74
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 17 VTVTGGGGFLGARLADYLLENECPLRVSALLXTDVHQPTLSPXRHADSRVSXLAADV 187
V VTG GG++ + + LLE +R + TD L + A R++ +AD+
Sbjct: 8 VCVTGAGGYIASWIVKLLLERGYTVRGTVRNPTDPKNNHLRELQGAKERLTLHSADL 64
>At1g08200.1 68414.m00906 expressed protein
Length = 389
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 11 MKVTVTGGGGFLGARLADYLLENECPLRVSAL 106
M + + G GGF+G+ L + L+ E P +V AL
Sbjct: 18 MTICMIGAGGFIGSHLCEKLM-TETPHKVLAL 48
>At2g27860.1 68415.m03377 expressed protein
Length = 389
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 11 MKVTVTGGGGFLGARLADYLLENECPLRVSAL 106
+ + + G GGF+G+ L + LL E P +V AL
Sbjct: 18 LTICMIGAGGFIGSHLCEKLL-TETPHKVLAL 48
>At2g21280.1 68415.m02533 expressed protein similar to YfhF
(GI:2804536) [Bacillus subtilis]
Length = 347
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 11 MKVTVTGGGGFLGARLADYLLENECPLRV 97
M V+VTG GF+G RL L + +RV
Sbjct: 46 MTVSVTGATGFIGRRLVQRLRADNHAIRV 74
>At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar
to cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus
gunnii], Pinus taeda [GI:17978649]; contains
non-consensus GG acceptor splice site at exon 4
Length = 317
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 14 KVTVTGGGGFLGARLADYLL 73
KV VTG GGF+ + L +LL
Sbjct: 6 KVCVTGAGGFIASWLVKFLL 25
>At2g45400.1 68415.m05646 dihydroflavonol 4-reductase family /
dihydrokaempferol 4-reductase family similar to
dihydroflavonol 4-reductase (SP:P51102), vestitone
reductase (Medicago sativa, GI:973249)
Length = 364
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 17 VTVTGGGGFLGARLADYLLENECPLRVSALLXTDVHQPTLS---PXRHADSRVSXLAADV 187
V VTGG GF+ + L LL+ +R + ++ ++ +S A R+ AD+
Sbjct: 40 VCVTGGSGFVASWLIMRLLQRGYSVRATVRTNSEGNKKDISYLTELPFASERLQIFTADL 99
Query: 188 TAP 196
P
Sbjct: 100 NEP 102
>At1g68540.1 68414.m07830 oxidoreductase family protein similar to
cinnamoyl CoA reductase [Eucalyptus gunnii, gi:2058311],
cinnamyl-alcohol dehydrogenase, E. gunnii [gi:1143445],
CPRD14 protein, Vigna unguiculata [gi:1854445]
Length = 321
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 23 VTGGGGFLGARLADYLLENECPLRVSALLXTDVHQ-PTLSPXRHADSRVSXLAADVTAPG 199
VTGG GF+ + + LLE +R + D + L + A R+ L AD+T G
Sbjct: 6 VTGGTGFIASYIIKSLLELGHTVRTTVRNPRDEEKVGFLWEFQGAKQRLKILQADLTVEG 65
>At1g55650.1 68414.m06370 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 337
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 204 ATPGAVTSAARXETRESACRXG-ERVG*CTSVNSSAET 94
A A TSA+ ET + A + + CTS +S+AET
Sbjct: 294 AATDAGTSASAAETADEASQENLAKTDACTSASSAAET 331
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.133 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,562
Number of Sequences: 28952
Number of extensions: 33212
Number of successful extensions: 101
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 12,070,560
effective HSP length: 49
effective length of database: 10,651,912
effective search space used: 213038240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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