Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M15
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    27   1.8  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    27   2.4  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   4.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.4  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 57  LSLATQHILIKCYWNVDCIMSEVNESIAAGKHADKHNTDGDNDSGVD 197
           L++   H++  C  N++ ++++VN SIA   +A        ND  VD
Sbjct: 334 LAMTRPHLVHSCNLNIESLITDVNRSIAT--YAITTLLKTGNDESVD 378


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
 Frame = +3

Query: 132 SIAAGKHADKHNTDGDNDS----GVDESTQGHDMNGSPGSPNKKIPSKLPTKEXXXXXXX 299
           S+ +   +   NTD    S     ++ ++ G D +    SP+++IPS  P          
Sbjct: 32  SLLSLSSSSSSNTDSSGSSLGSLSLNSNSSGSDNDSKVSSPSREIPSDPPLPRAVPTVRL 91

Query: 300 XXXXXXXXXXXXXXXPENPPSIEKKKVPMNKVQ--VGNAPSP 419
                           ++P    ++ +P    Q  +G+ P+P
Sbjct: 92  GRSTSSRSRNSLNLDMKDPSEKPRRSLPTAAGQNNIGSPPTP 133


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 111 IMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSP-NKKIPSKLPTK 275
           I SE  ++  +    ++H    DN + ++ + + +    S  SP  KK  S LP +
Sbjct: 248 ISSEAAQASRSSFQVERHRPTPDNSAVIEAARRTYSSISSSSSPFKKKTQSHLPNR 303


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 423  YWVKAHFLLELCSWVLFSFQLMVDSLV 343
            Y+VK  +L E+C  ++   +++ DS V
Sbjct: 1730 YYVKLFYLSEICKTIISMIKVVADSSV 1756


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,769
Number of Sequences: 5004
Number of extensions: 44637
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)