Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M15
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 28 4.3
05_04_0301 + 19983073-19983196,19984508-19985105,19985190-199854... 28 5.7
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162... 27 7.5
01_01_0572 - 4244714-4245311,4245694-4245736,4246172-4246283,424... 27 7.5
10_08_0077 + 14690894-14691030,14691258-14691936 27 10.0
08_02_0907 - 22485714-22486859,22487836-22487882,22488456-224888... 27 10.0
03_05_0618 + 26177743-26178420,26179477-26179617 27 10.0
02_01_0758 + 5623953-5624171,5624251-5624430,5624533-5624591,562... 27 10.0
01_01_1127 + 8930593-8932681,8932812-8933401 27 10.0
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 402 GNAPSPNIKAVKSKIGSLDNATYKPGGGKIRIENRKLEFG 521
GN PSP+ + ++K + N Y G G + L G
Sbjct: 756 GNTPSPSTQCYENKFATSTNGNYSIGNGDTLSSSNSLHAG 795
>05_04_0301 +
19983073-19983196,19984508-19985105,19985190-19985442,
19985947-19985979
Length = 335
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 135 IAAGKHADKHNTDGDNDSGVDESTQG--HDMNGSPGSPNKKIP 257
+A K +K +D D D +G HD N SPG N +P
Sbjct: 220 VAVFKDTEKDRSDPDYDRNYKRYVRGPVHDFNVSPGGFNFVVP 262
>03_02_0671 +
10315260-10315370,10315984-10316027,10316141-10316204,
10316278-10316392,10316504-10316571,10316917-10317014,
10317543-10317657,10318425-10318641,10319541-10319667,
10319803-10319857,10319997-10320093,10320748-10320876,
10320964-10321097,10321660-10321746,10321998-10322069,
10322320-10322359,10322535-10322779,10323587-10323764,
10323931-10324136,10324681-10324977
Length = 832
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 93 YWNVDCIMSEVNESIAAGKHADKHNTDGDND 185
Y+N + ++SE NESIA + A+ D+D
Sbjct: 233 YYNEETLVSEANESIAESEVANHPKKQWDDD 263
>01_01_0572 -
4244714-4245311,4245694-4245736,4246172-4246283,
4246462-4246551,4246625-4246787,4246909-4247015,
4247149-4247230,4247314-4247351,4247434-4247542,
4248031-4248095,4248358-4248468,4248610-4248747
Length = 551
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 144 GKHADKHNTDGDNDSGVDESTQGHDMN 224
GK D +DG+ND G D +D N
Sbjct: 432 GKDDDSSGSDGENDVGSDGENDAYDPN 458
>10_08_0077 + 14690894-14691030,14691258-14691936
Length = 271
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 346 GVLAVALLLEDRERLAFKLLLDFSFVGNL 260
G AV + +ED E FKLLL F + +L
Sbjct: 148 GDAAVVVCIEDMEARVFKLLLRFMYTDSL 176
>08_02_0907 -
22485714-22486859,22487836-22487882,22488456-22488830,
22489339-22489500,22490325-22490439
Length = 614
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 96 WNVDCIMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGH 215
W + C+ + ++AA A + D D+D + E Q H
Sbjct: 140 WRMYCLEERIQANVAANAGAGGEDDDDDDDVVIVEEPQVH 179
>03_05_0618 + 26177743-26178420,26179477-26179617
Length = 272
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 147 KHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSK 263
+ ++ D ++++G DE + NGS GS P+K
Sbjct: 221 EEGEEEAEDEEDEAGADEEDESKVANGSKGSSGSAQPNK 259
>02_01_0758 +
5623953-5624171,5624251-5624430,5624533-5624591,
5625243-5625390,5625476-5625547,5625636-5625746,
5626615-5626882,5627222-5627265,5627393-5627477,
5627554-5627600
Length = 410
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +3
Query: 354 PPSIEKKKVPMNKVQVGNAPSPNIKAVKSKIGSLDNATYKPGGGKIRIENRKLE 515
PP +E KK+P + A SP + K+K T P G +R+ L+
Sbjct: 256 PPKVELKKIPPTR-----ARSPKLGRSKNKSAGETEETVTPPGRPVRLSLDSLD 304
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 117 SEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMN 224
S++ ++ G+ DGD D G DE +G+D N
Sbjct: 52 SDIGPAMGRGR-GKPPGDDGDGDGGGDEEEKGYDEN 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,208,274
Number of Sequences: 37544
Number of extensions: 275241
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -