Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M15
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42316| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.067
SB_53695| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.12 
SB_46127| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.47 
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_19840| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)                 28   5.8  
SB_56851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)                 27   7.7  
SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_42316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 150 HADKHNTDGDNDSGVDESTQGHDMNG 227
           H D  +   DND GVD+   GHD NG
Sbjct: 701 HVDNDDCHDDNDDGVDDDDDGHDDNG 726



 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 135 IAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPN 245
           ++ G+  DK+N DG ND  VD S  GHD N +    N
Sbjct: 653 LSQGEGDDKNNDDGGNDD-VD-SDDGHDDNDNDDDGN 687


>SB_53695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 90  CYWNVDCIMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIP 257
           C   +D IMS    ++A  +     NTD D+D  + E T+ ++     GSP K  P
Sbjct: 115 CEALLDKIMSSKPSTLADSRGQPDQNTDSDDDEDLRELTKEYESEDLTGSPLKSEP 170


>SB_46127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 126 NESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPG 236
           N+S       D    D DNDS VD+   G+D NG  G
Sbjct: 140 NDSAVDDDDNDSAVDDDDNDSAVDDYKNGYDDNGDDG 176


>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +3

Query: 345 PENPPSIEKKKVPMNKVQVGNA-PSPNIKAVKSK-IGSLDNATYKPGGGKI-RIENRKLE 515
           PENP   EK K     V+ GN  P P+ + + SK + S + A   P G +I  I+N    
Sbjct: 634 PENPGKREKAKTNKTNVETGNRNPEPSGRGLWSKDVRSANCAIGLPRGARIDAIDND--- 690

Query: 516 FGNATPKIAAKN 551
            GN    +AA++
Sbjct: 691 -GNTPFSLAARH 701


>SB_19840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 144 GKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLPTK 275
           G  +D H T GD  S    +T+G   +G P  P  K   K+P++
Sbjct: 108 GMSSDSHATRGDGVSSDSHATRG---DGVPSEPYAKRDDKMPSE 148


>SB_33208| Best HMM Match : Pepsin-I3 (HMM E-Value=4.7)
          Length = 256

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 177 DNDSGVDESTQGHDMNGSPGSPN 245
           DND   D+   GHD NG  G  N
Sbjct: 197 DNDDDDDDDDDGHDDNGGDGGGN 219


>SB_56851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 156 DKHNTDGDNDSGVDESTQGHDMNG 227
           DK N D DND  VD+    +D +G
Sbjct: 64  DKDNDDYDNDDDVDDDNDDYDDDG 87


>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
          Length = 440

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 117 SEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLPTKE 278
           S   E +   K A K  T+   DS  D+ + G D +  P    KK+  K PTK+
Sbjct: 98  SSDEEEVKPKKDAKKAATE---DSSSDDDSSGEDEDEKP---KKKVEKKTPTKQ 145


>SB_16980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 174 GDNDSGVDESTQGHDMNG--SPGSPNKKIPSKLPTKE 278
           G+ +SG DE T+G +M G  S  +P+  + +  P  E
Sbjct: 404 GEEESGEDEGTEGDEMGGEASKTTPDTPVSASGPQME 440


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,522,529
Number of Sequences: 59808
Number of extensions: 319589
Number of successful extensions: 1051
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)