Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M15
(552 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 30 0.89
At2g07240.1 68415.m00831 Ulp1 protease family protein contains P... 29 1.6
At3g03140.1 68416.m00310 expressed protein 29 2.7
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 29 2.7
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s... 29 2.7
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 29 2.7
At1g73660.1 68414.m08530 protein kinase family protein contains ... 28 4.8
At4g13730.2 68417.m02131 RabGAP/TBC domain-containing protein lo... 27 6.3
At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein lo... 27 6.3
At1g01730.1 68414.m00092 expressed protein 27 6.3
At5g62550.1 68418.m07850 expressed protein 27 8.3
At4g26940.2 68417.m03877 galactosyltransferase family protein co... 27 8.3
At4g26940.1 68417.m03876 galactosyltransferase family protein co... 27 8.3
At2g31865.2 68415.m03893 poly (ADP-ribose) glycohydrolase (PARG)... 27 8.3
At2g18090.1 68415.m02103 PHD finger family protein / SWIB comple... 27 8.3
At1g79410.1 68414.m09254 transporter-related low similarity to o... 27 8.3
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 30.3 bits (65), Expect = 0.89
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -2
Query: 197 IDSTVIISICVMFIRVFSRSN*FIYFRHYAINVPVTLD 84
+DST+ ++I ++ + +F +YFRH+A + T+D
Sbjct: 46 LDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVD 83
>At2g07240.1 68415.m00831 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 928
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 144 GKHADKHNTDGDNDSGVDESTQGHDMNGSPGS 239
G H DK GDN D+ T G + N +P S
Sbjct: 321 GPHTDKEVALGDNGLQADKETGGEEQNSNPVS 352
>At3g03140.1 68416.m00310 expressed protein
Length = 769
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 141 AGKHADKHNTDGDNDSGVDESTQGHD 218
AG+H+++ NT + SG DEST +
Sbjct: 334 AGRHSERRNTFSRHTSGEDESTSSEE 359
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +3
Query: 345 PENPPSIEKKKV-----PMNKVQVGNAPSPNIKAVKSKIGSLDNATYKPGGGKIR 494
P PPSI K+ P ++ G++PSP K+G+L ++ KP +R
Sbjct: 239 PPPPPSIAVKQSAPTPSPPPPIKKGSSPSPPPPPPVKKVGALSSSASKPPPAPVR 293
>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) strong
similarity to dynamin-like protein 6 (ADL6) [Arabidopsis
thaliana] GI:6651399; contains Pfam profiles PF01031:
Dynamin central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain, PF00169: PH domain;
identical to cDNA dynamin-like protein ADL3, GI:4803835
Length = 920
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +3
Query: 114 MSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLP 269
M+ N + + ++ + G + D + G D +GS GS + P++LP
Sbjct: 857 MNAFNAAASGPDSLKRYGSGGHSRRYSDPAQNGEDSSGSGGSSRRTTPNRLP 908
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 57 LSLATQHILIKCYWNVDCIMSEVNESIAAGKHADKHNTD-GDNDSGVDESTQGHDMNGSP 233
L L + ++ C++ VD + ++VN + + + + D +DES GH SP
Sbjct: 182 LFLGHRDSVVGCFFGVDKMTNKVNRAFTIARDGYIFSWGYTEKDVKMDESEDGHSEPPSP 241
Query: 234 GSPNK 248
+P++
Sbjct: 242 VTPDR 246
>At1g73660.1 68414.m08530 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 1030
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 165 NTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSK 263
N+DGD+ SG E D N P S ++I K
Sbjct: 692 NSDGDDGSGGHEPQGSGDSNHGPNSGGERISDK 724
>At4g13730.2 68417.m02131 RabGAP/TBC domain-containing protein low
similarity to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 408
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 345 PENPPSIEKKKVPMNKVQVGNAPSPNIKA---VKSKIGSLDNATYKPGGG 485
P +PP +E+ + + AP+P + KS+I L N + G G
Sbjct: 36 PPSPPIVERPPFSSSPSAISTAPAPPLPVRPPSKSEINDLQNGSGNDGAG 85
>At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein low
similarity to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 449
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 345 PENPPSIEKKKVPMNKVQVGNAPSPNIKA---VKSKIGSLDNATYKPGGG 485
P +PP +E+ + + AP+P + KS+I L N + G G
Sbjct: 36 PPSPPIVERPPFSSSPSAISTAPAPPLPVRPPSKSEINDLQNGSGNDGAG 85
>At1g01730.1 68414.m00092 expressed protein
Length = 224
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 132 SIAAGKHADKHNTDGDNDSGVDESTQGHDM--NGSPGS 239
S+ +KH++DGD D V S G + +G PG+
Sbjct: 156 SVLRSSETEKHSSDGDGDKVVGGSAFGWNFITSGGPGT 193
>At5g62550.1 68418.m07850 expressed protein
Length = 487
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 360 SIEKKKVPMNKVQVGNAPSPN--IKAVKSKIGSLDNATYK 473
S+++ K+P ++ + N P+ N +K+V S + SL K
Sbjct: 71 SVDRTKLPPRRLSIPNKPTSNSSVKSVSSSVTSLSEVKPK 110
>At4g26940.2 68417.m03877 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 306
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/94 (22%), Positives = 36/94 (38%)
Frame = +3
Query: 111 IMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLPTKEXXXX 290
I+ +V +S A + DK + + + + Q MNGSP S + K+P + ++
Sbjct: 83 ILGDVYKSPDAIQTLDKTISKLETELADARAAQESIMNGSPVSDDFKLPETVTKRKYLMV 142
Query: 291 XXXXXXXXXXXXXXXXXXPENPPSIEKKKVPMNK 392
PP E+KK+ K
Sbjct: 143 VGVNTAFSSRKRRDSVRATWMPPGEERKKLEEEK 176
>At4g26940.1 68417.m03876 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 407
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/94 (22%), Positives = 36/94 (38%)
Frame = +3
Query: 111 IMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKKIPSKLPTKEXXXX 290
I+ +V +S A + DK + + + + Q MNGSP S + K+P + ++
Sbjct: 83 ILGDVYKSPDAIQTLDKTISKLETELADARAAQESIMNGSPVSDDFKLPETVTKRKYLMV 142
Query: 291 XXXXXXXXXXXXXXXXXXPENPPSIEKKKVPMNK 392
PP E+KK+ K
Sbjct: 143 VGVNTAFSSRKRRDSVRATWMPPGEERKKLEEEK 176
>At2g31865.2 68415.m03893 poly (ADP-ribose) glycohydrolase (PARG)
family protein contains Pfam profile: PF05028 poly
(ADP-ribose) glycohydrolase (PARG)
Length = 532
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 96 WNVDCIMSEVNESIAAGKHADKHNTDGDNDSGVDESTQ 209
+ +D ++ EVN++ + H K+N D +D ST+
Sbjct: 364 YKLDALIREVNKAFSGYMHQCKYNIDVKHDPEASSSTK 401
>At2g18090.1 68415.m02103 PHD finger family protein / SWIB complex
BAF60b domain-containing protein / GYF domain-containing
protein contains Pfam profiles PF02201: BAF60b domain of
the SWIB complex, PF02213: GYF domain, PF00628:
PHD-finger
Length = 824
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/47 (21%), Positives = 21/47 (44%)
Frame = +3
Query: 111 IMSEVNESIAAGKHADKHNTDGDNDSGVDESTQGHDMNGSPGSPNKK 251
+ ++ + AG+ D+ NT + G + GH + P S + +
Sbjct: 386 VTETMSYQVNAGRSCDRLNTSEQHQEGESQQLNGHSIQVRPSSSDSR 432
>At1g79410.1 68414.m09254 transporter-related low similarity to
organic anion transporter 3 [Rattus norvegicus]
GI:5545293; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 515
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -3
Query: 358 GGFSGVLAVALLLEDRERLAFKLLLDFSF---VG-NLLGIFL 245
GG SGVL + L R ++AF L L F +G NL+ I+L
Sbjct: 387 GGASGVLCFVMSLYGRTKIAFALELGSFFCARIGFNLMAIYL 428
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,675,786
Number of Sequences: 28952
Number of extensions: 231101
Number of successful extensions: 637
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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