Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M12
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0256 + 21331396-21332268                                         32   0.26 
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    29   2.4  
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    28   4.2  
12_02_1094 + 26032135-26032164,26032975-26033152,26033234-260340...    27   7.3  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   7.3  
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420...    27   9.7  
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789...    27   9.7  

>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = -2

Query: 205 HSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDADQENR 44
           HS    I + S + RL AHP   P +RLIL+  D +  LF     A  AD + R
Sbjct: 129 HSPSDLISLLSRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180


>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
            44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 53   LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAMVKV 214
            L G+ SR V    P + ++ Y D+ EQW   R R  +  L I+ + + G+  +V
Sbjct: 886  LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935


>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 517 EHVVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVVME 404
           E + HSG  + +V  L N W+++    F  + VV+V E
Sbjct: 418 ELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455


>12_02_1094 +
           26032135-26032164,26032975-26033152,26033234-26034017,
           26034135-26034216,26034968-26035177
          Length = 427

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 456 CQIFLKFRTSTLSVPEWTTCSKIK 527
           C++ L+F+   + + EW +C K K
Sbjct: 326 CKLALRFQRKEVKIQEWESCQKAK 349


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 161 AGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 334
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>12_02_0244 -
           16241243-16241279,16241781-16241848,16241930-16242032,
           16242095-16242256,16242305-16242369,16242547-16242612,
           16242738-16242829,16243029-16243134,16243231-16243279,
           16243387-16243540,16243661-16243687,16243797-16243959,
           16244621-16244701
          Length = 390

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 538 RCTNLIFEHVVHSGTDSVEVRN--LRNIWHVFSGECF 434
           R  NL+ ++V HSG + +++    LRN+   FS  CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390


>02_05_0874 -
           32377906-32378131,32378269-32378384,32378516-32378921,
           32379023-32379139,32379229-32379291,32380183-32380373
          Length = 372

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 300 AVAAPNFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVPSEL 178
           AV AP  +W  R   PR L+L   L +MG   + P +   L
Sbjct: 53  AVMAPFALWFERRVRPR-LTLIIFLKIMGLAILEPVLDQNL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,729,067
Number of Sequences: 37544
Number of extensions: 305192
Number of successful extensions: 708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)