Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M12
(542 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 31 0.80
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 30 1.1
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0) 28 4.3
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31) 28 5.7
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37) 28 5.7
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039) 28 5.7
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074) 27 9.9
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 9.9
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38) 27 9.9
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9) 27 9.9
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 31.9 bits (69), Expect = 0.35
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +2
Query: 116 EDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAA 295
+++P V+ + TIN + +K + GN + L A S N K G
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707
Query: 296 TAGLAY-DNVNGHGATLT-KTHIPGFGDKMTAAGKVN 400
++Y DN+N A T + IPG K + KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 30.7 bits (66), Expect = 0.80
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 332 GATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQ-VPNFNTVGAG 502
G+T T IPG G + GK ++ N H S A P VP T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -2
Query: 193 GTIRVDSESTRL---PAHPRVSPLLRLILILFD---VVTRLFNKHVTAV 65
G + V+ + RL HPR SPLL+L+ D VV LF +HV AV
Sbjct: 614 GKVAVEEKRPRLLRSEFHPRRSPLLQLLSNTPDVHVVVVELFQRHVHAV 662
>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
Length = 1325
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 220 YGYLDHSTGGTIRVDSESTRLPAHPRVSPL 131
Y YL H T T + DS STR+ RV L
Sbjct: 935 YAYLHHDTRTTCKYDSYSTRIYTATRVRQL 964
>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +2
Query: 311 YDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQVPNFNT 490
Y NGH L ++ P T V F NN+DFS++ A N PN+ F
Sbjct: 273 YTPTNGH-FQLDESVFPNSDSPDTRDQTVESFEINNNDFSSQENAQSN-PNLDNNDRFRP 330
Query: 491 V 493
V
Sbjct: 331 V 331
>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
Length = 624
Score = 27.9 bits (59), Expect = 5.7
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = +2
Query: 86 EEPGYYIEQYE--DQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGS 259
E Y E+YE D AN QA + N+ ++G ++ + ++G + K+ A S
Sbjct: 113 ERSEYGGERYETSDFQRSVANRYKELQADSWKKNNVTSAGGLLSLDLSGEGHFKVHANAS 172
Query: 260 VDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGF 367
+ + Y + A L HIPGF
Sbjct: 173 TAIPAAETTDWPQENI-YSTIQYQEAPLPPAHIPGF 207
>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
Length = 1655
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 11 HSKMFAKLFLVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDG 190
HS + L L L+ GV + +++ Y E ++ E W + R+ + AGAL++ S
Sbjct: 1039 HSYLLTNLALADFLM-GVYMLLIAIKDVEYQGEYFKHDIE-WRSGRLCQFAGALSLTSSE 1096
Query: 191 TS 196
S
Sbjct: 1097 VS 1098
>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
Length = 685
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 276 WLVRSTEPRALSLWFSLPVMGTLTIAPEVPSELIV 172
W+V ++EP LS + ++ T +I P P I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506
>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 262 D*TKSTELVVFIASYGYLDHSTGGTIRVDSES 167
D +K+ E + IA++ L+H+ G I DSES
Sbjct: 800 DLSKALEDIKNIAAFNVLEHAKSGEIESDSES 831
>SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)
Length = 532
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 466 SSSSELQHCRCRSGLHVQRSNW 531
SS +LQ C+ +G H+QR +W
Sbjct: 332 SSRVDLQACKLGTGRHLQRRDW 353
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +2
Query: 68 SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLS 247
+R + EP ++ EDQ E A+S +R +AG +D G + + T N NH
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239
Query: 248 ALGSVDLTNQMKLGAATAGLAYDNVNG 328
+ + +K G D++ G
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKG 1265
>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
Length = 550
Score = 27.1 bits (57), Expect = 9.9
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +2
Query: 197 GAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDK 376
G V +T E +L ALG +T+ + T L++ N + A+ K+ I G
Sbjct: 401 GIYVGGAVTAMEEDQLVALG---VTHVLNAAQGTKRLSHVNTD---ASFYKSGIIFHGIP 454
Query: 377 MTAAG--KVNLFHNNNHDFSAKAFATKNMP 460
T K+N + + DF A A TKN P
Sbjct: 455 ATDVFMFKLNKYFDEAADFIASAVGTKNCP 484
>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Frame = +2
Query: 365 FGDKMTAAG---KVNLFHNNNHDFSAKAF 442
F ++ T++G KV LFH N+ F+AK+F
Sbjct: 35 FAEQDTSSGLTTKVCLFHGKNNPFTAKSF 63
>SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)
Length = 349
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/87 (22%), Positives = 38/87 (43%)
Frame = +2
Query: 230 ENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFH 409
+N+K S D ++ K A T+GLA + +G ++P +++ K N
Sbjct: 83 DNYKKKKTKSKDNNSETKAKAGTSGLAKNKTKDNGT----PNLPSLFERIK---KKNNAT 135
Query: 410 NNNHDFSAKAFATKNMPNIPQVPNFNT 490
N S + P +P++ +F+T
Sbjct: 136 KNGETTSQVTINSSGTPALPKLASFDT 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,940,064
Number of Sequences: 59808
Number of extensions: 346590
Number of successful extensions: 760
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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