Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M11
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0698 - 20765305-20768526                                         28   4.3  
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320...    28   5.6  
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    27   7.5  
08_01_0995 - 10079140-10079314,10080069-10080086,10081362-10081600     27   9.9  

>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 293 AILGCCNGNVMNSYCSESLKCG 358
           A++ C N + M  YC +S KCG
Sbjct: 477 AVILCTNDSKMAKYCCDSAKCG 498


>05_05_0136 - 22631260-22631325,22631735-22631821,22631898-22632026,
            22632122-22632190,22632271-22632351,22632598-22632702,
            22632786-22633016,22633098-22634272,22634391-22634457,
            22636705-22637778,22638119-22638274,22638827-22638985,
            22639062-22639220,22639306-22639422,22639502-22639612,
            22639690-22640358
          Length = 1484

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 61   INVKLIIAYKQYNGDDNKDDFNSVRNYTNILR 156
            +N KL +  KQ+N ++  DD  SV    N L+
Sbjct: 1425 LNPKLTVVRKQHNSNEADDDLPSVMTCANYLK 1456


>11_01_0298 -
           2231063-2232015,2232124-2232798,2232918-2232946,
           2233053-2233513,2233593-2233717,2233801-2234098,
           2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 284 CARAILGCCNGNVMNSYCSESLKCGAFFFDVNPCDDXFMIDALDAAKSF 430
           C R+ LGCCN  ++    S+   C  ++   N CD   ++  L ++ ++
Sbjct: 615 CGRSFLGCCNYLLVIGTSSDVEFCARYY---NHCDVVKVVQILASSDAY 660


>08_01_0995 - 10079140-10079314,10080069-10080086,10081362-10081600
          Length = 143

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 55  KIIINIGIKYCTTNTCVS 2
           K++   G KYC TN C S
Sbjct: 122 KVLYGCGYKYCATNVCFS 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,539,862
Number of Sequences: 37544
Number of extensions: 199008
Number of successful extensions: 397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)