Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M11
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32160.2 68415.m03931 expressed protein                             28   3.6  
At2g32160.1 68415.m03930 expressed protein                             28   3.6  
At1g53110.1 68414.m06014 expressed protein                             27   6.2  
At1g47270.1 68414.m05233 F-box family protein / tubby family pro...    27   6.2  

>At2g32160.2 68415.m03931 expressed protein
          Length = 449

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 205 VGWSSQGARISYYLLRSAKYLCNY 134
           +G+ SQG  +SYY++  + ++ NY
Sbjct: 251 LGFRSQGNEVSYYMMLCSSFILNY 274


>At2g32160.1 68415.m03930 expressed protein
          Length = 415

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 205 VGWSSQGARISYYLLRSAKYLCNY 134
           +G+ SQG  +SYY++  + ++ NY
Sbjct: 251 LGFRSQGNEVSYYMMLCSSFILNY 274


>At1g53110.1 68414.m06014 expressed protein
          Length = 439

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +1

Query: 67  VKLIIAYKQYNGDDNKDDFNSVRNYTNILRSSRDNKKF*HLENSSQPFLRRIRIYFERKK 246
           VK  I YK+++ ++  DDF+ +  Y  + +  ++  +    E   +  L + R+  ERK+
Sbjct: 258 VKKAIEYKRFSTEEESDDFD-IPVYEKLGKEEKEIDEETLKEKKREEQLEKARLAMERKR 316


>At1g47270.1 68414.m05233 F-box family protein / tubby family
           protein contains Pfam profiles: PF00646 F-box domain,
           PF01167 Tub family; similar to Chain A, C-Terminal
           Domain Of Mouse Brain Tubby Protein Length(GI:6730158)
           [Mus musculus]; similar to phosphodiesterase (GI:467578)
           [Mus musculus]; similar to Tubby protein homolog
           (Swiss-Prot:O88808) [Rattus norvegicus]
          Length = 413

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 115 DDFN-SVRNYTNILRSSRDNKKF*HLENSSQPFLRRIRIYFERKKWSGSS 261
           +DF+ S  NY   LRS+    KF   EN   PF R++    +   W  SS
Sbjct: 192 NDFSRSSSNYIGKLRSNFLGTKFTVYENQPPPFNRKLPPSMQVSPWVSSS 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,870,077
Number of Sequences: 28952
Number of extensions: 175210
Number of successful extensions: 389
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)