Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M10
(545 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 31 0.084
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 29 0.45
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 28 0.78
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 28 1.0
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 5.5
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 7.3
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 25 7.3
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 25 7.3
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 9.6
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 9.6
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 31.5 bits (68), Expect = 0.084
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = -2
Query: 385 HISPTP-SIVLPFVSELIKKCQTMDF----VCIDLFR*HRATRQKK 263
H SPT VL F++ I +C + F VC+D F+ H QKK
Sbjct: 555 HTSPTQHKAVLEFLNSCINRCISRVFAYLDVCVDCFKKHSVNSQKK 600
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 29.1 bits (62), Expect = 0.45
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 287 SPKQINTDEVHRLTFFDQLRNERQDDRWSWGYVNS---NGSGQEKIKSTTTARTTNAVIY 457
SPK + L+ D ++ ++ + GY+++ NGS Q K + +T N++
Sbjct: 355 SPKSKRVKTLENLSIMDFVQPKQMFGKEPEGYLSNQSNNGSAQNKKSGDNSEKTKNSLKS 414
Query: 458 KSGDSSNT 481
S S+NT
Sbjct: 415 SSKKSANT 422
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 28.3 bits (60), Expect = 0.78
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 359 DDRWSWGYVNSNGSGQEKIKSTTTARTTNAVIYKSGDSSNTTEDVNPCSPFI-PPPARGF 535
DD W +G + S I T+T+ TT A S+ T V P S + PP+
Sbjct: 318 DDGWEFGTIKQGQSNVSSITGTSTSTTTAAT-----SSTTVTGTVIPKSSTVHEPPSSND 372
Query: 536 SAP 544
S P
Sbjct: 373 SHP 375
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.0
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Frame = -2
Query: 469 ISTFIYYSVSCPGCCRAFNFFL----TRSVTVHISPTPSIVLPFVSELIKKCQTMDFVCI 302
IS F+ +++ PG + ++ + +R + IS P + + ++IKKC ++F+CI
Sbjct: 129 ISEFLRWALMPPGYVKEWHVGVRVKSSRKLVAFISAVP-LSIRVRDKIIKKCAEVNFLCI 187
Query: 301 DLFR*HRATRQKKPSKNQIK 242
H+ R K+ + IK
Sbjct: 188 -----HKKLRSKRLTPLLIK 202
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 5.5
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 395 GSGQEKIKSTTTARTTNAVIYKSG---DSSNTTEDVNPCSPFIPPP 523
G+ Q S +T++ + V Y G +S+NTT+ +N + F PPP
Sbjct: 103 GTSQYPSASFSTSQHPSQV-YNDGSTLNSNNTTQQLNNNNGFQPPP 147
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 381 YPQLHLSSCRSFRS*SKNVKRWTSSVLICFGDTVQHVKKNQVKIK 247
YP + F+ S N W+S + CF D V + +K + IK
Sbjct: 181 YPHSMDAEISKFKWDSNNNNDWSSLMKDCFRDVVNNNRKMKEIIK 225
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 281 TVSPKQINTDEVHRLTFFDQLRNERQDDRWSWG 379
TVS K+ N D V RL D R E +W+ G
Sbjct: 96 TVSEKEENKDAVTRLDSQDVKRFEETYSQWNSG 128
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 357 CRSFRS*SKNVKRWTSSVLICFGDTVQHVKKNQV 256
C+S R + + S ICFG ++H+KK +
Sbjct: 81 CQSLRGLAYYLLEQYQSSAICFGFALKHLKKEDL 114
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 24.6 bits (51), Expect = 9.6
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +2
Query: 341 LRNERQDDRWSWGYVNSNGSGQEKIKSTTTARTTNAVIY----KSGDSSNTTEDVN 496
LR ++++D SW + I +T+ +TN +Y KS +SS T + +
Sbjct: 1085 LREKKKEDPISWMEGTMEDQTPDDISLASTSLSTNRSLYTQYTKSSNSSKMTRNTS 1140
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 380 YVNSNGSGQEKIKSTTTARTTNAVIYKSGDSSNTTEDVN 496
Y++ N S + S TT+ + +GD N +D N
Sbjct: 348 YISPNQSPNTDVPSLNRDDTTDPKVVNTGDIINMLDDAN 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,344
Number of Sequences: 5004
Number of extensions: 33384
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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