Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M08
(614 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 31 0.61
At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM... 29 2.4
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 29 3.2
At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almo... 29 3.2
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote... 28 4.3
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta... 28 5.7
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 27 7.5
At1g71320.1 68414.m08232 S locus F-box-related / SLF-related con... 27 7.5
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 27 7.5
At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containi... 27 9.9
At2g43250.1 68415.m05375 expressed protein and genefinder 27 9.9
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 31.1 bits (67), Expect = 0.61
Identities = 20/45 (44%), Positives = 21/45 (46%)
Frame = +2
Query: 293 RRCNRWSGTG*CKRPRSKSHGYTHPRVRRQGDSCRQSESLPQRXP 427
R C GTG R RSKS T PR RR R+S S R P
Sbjct: 112 RECRNRGGTG---RRRSKSRSRTPPRYRRSPSYGRRSYSPRARSP 153
>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
identical to SP|Q42510; contains Pfam profile PF01369:
Sec7 domain
Length = 1451
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 66 GVQSRYLIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKN 245
GV S Y IVS+PV E ++ S + A GA +L DG G G + P + D +
Sbjct: 249 GVDSDYAIVSKPVEDGNANSEYDVENS--MATFATGAQSLMDDGPVGPGSRKPASPYDLH 306
Query: 246 IVS 254
I++
Sbjct: 307 IMT 309
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 329 KRPRSKSHGYTHPRVRRQGDSCRQSESLPQRXPRHHSEGF 448
+ PR +SHG ++ +GD +SE + RH+ + F
Sbjct: 253 RSPRGRSHGRSYREDSYEGDHWNESERRREYEDRHNQDHF 292
>At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almost
identical to DegP protease precursor GB:AF028842 from
[Arabidopsis thaliana] (J. Biol. Chem. 273 (12),
7094-7098 (1998))
Length = 439
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = -2
Query: 364 MCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSEL 185
+C SV L+ F+L +A+PAV + S +V + + + ++ TP+ + L
Sbjct: 83 LCTSVALS---FSLFAASPAVESAS-AFVVSTPKKLQTDELATVRLFQENTPSVVYITNL 138
Query: 184 SVRAPCASLRTLELVNSSGS 125
+VR +L LE+ SGS
Sbjct: 139 AVRQDAFTLDVLEVPQGSGS 158
>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
kinase, putative
Length = 773
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 391 AVTLSPNPGMCVSVRLTPWPFTLSSAT--PAVAAPSFCLLVKS 269
+++ S NPG+C P P S AT P + P+ + KS
Sbjct: 268 SISFSGNPGLCGGPTRNPCPIPSSPATVSPPTSTPALAAIPKS 310
>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
protein contains Pfam profile PF00226: DnaJ domain
Length = 2554
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 400 LPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK 266
L A+ LS G+C LTP+ T + A+ P L+K +
Sbjct: 1804 LQASQALSRLTGLCADESLTPYNATAADVLKALLTPKLASLLKDE 1848
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -2
Query: 394 AAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSK--EPIALT 248
++++ SP+P + + P+P +L + P+ ++ L+ S EPI T
Sbjct: 366 SSLSYSPSPSSLTDMPVAPYPSSLGTLAPSSSSDQCTELISSSSIEPITTT 416
>At1g71320.1 68414.m08232 S locus F-box-related / SLF-related
contains F-box domain Pfam:PF00646; contains TIGRFAM
TIGR01640: F-box protein interaction domain; similar to
S locus F-box (SLF)-S2-like protein (GI:13161528)
[Antirrhinum hispanicum]
Length = 392
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 364 MCVSVRLTPWPFTLSSATPAVA 299
M +S WPFTLS TPA+A
Sbjct: 144 MKLSPEFMQWPFTLSYLTPAMA 165
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 403 TLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPS 290
+LP + N + S LTP FT ++A PA P+
Sbjct: 342 SLPPGQYMPGNAALSASTPLTPGQFTTANAPPAPPGPA 379
>At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 593
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 270 DLTNRQKLGAATAGVALDNVNGHGVSLT 353
+L N + G TAGV N NG+GV T
Sbjct: 180 NLGNLNQTGPVTAGVNYGNNNGYGVKRT 207
>At2g43250.1 68415.m05375 expressed protein and genefinder
Length = 625
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/59 (28%), Positives = 22/59 (37%)
Frame = +3
Query: 396 GKVNLFHNDXHDITAKAFATRNMPDIAXVPNFNTVGGGIDYMFKDKIGASATAAHTDFI 572
G +NLF H AF +P A P F + G + K + A A T I
Sbjct: 460 GSLNLFLTHTHKAVTFAFTKVAVPSKAMAPGFASSGAKSTSLVKASLSAEKIRAVTHSI 518
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,487,472
Number of Sequences: 28952
Number of extensions: 282491
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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