Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M06
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1186 - 9440805-9440938,9442890-9442986 40 0.001
01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024 39 0.002
02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230 30 0.79
07_03_1325 + 25830838-25831440 29 1.0
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351 29 1.4
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 29 1.8
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 28 3.2
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 28 3.2
04_04_1689 + 35379627-35379746,35379823-35380344,35380428-353805... 27 4.2
05_07_0193 - 28319783-28320211,28320798-28320925,28321543-283218... 26 9.7
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 26 9.7
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 26 9.7
>01_01_1186 - 9440805-9440938,9442890-9442986
Length = 76
Score = 39.5 bits (88), Expect = 0.001
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 119 ENWGTEDADDEDVSVWEDNWEDDIVQDDF 205
+ W ++ DE + WED+W+DD V DDF
Sbjct: 32 QEWDDKEDGDEAIQQWEDDWDDDDVNDDF 60
>01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024
Length = 120
Score = 38.7 bits (86), Expect = 0.002
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 116 AENWGTEDADDEDVSVWEDNWEDDIVQDDF 205
++ W ++ +E V WED+W+DD V DDF
Sbjct: 76 SDEWDDKEEGNEAVQQWEDDWDDDDVNDDF 105
>02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230
Length = 171
Score = 29.9 bits (64), Expect = 0.79
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 116 AENWGTEDADDEDVSVWEDNWEDD 187
AEN G +DA DED S E N ED+
Sbjct: 83 AENQGDDDAGDEDASEEEGNDEDE 106
>07_03_1325 + 25830838-25831440
Length = 200
Score = 29.5 bits (63), Expect = 1.0
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 134 EDADDEDVSVWEDNWEDDIVQD 199
+DAD+ED+ W++++ D++ QD
Sbjct: 114 DDADEEDLKEWDEDFVDELDQD 135
>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
Length = 1007
Score = 29.1 bits (62), Expect = 1.4
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 260 TRLCFAPSAFPTV-VSTAG*NHPVRCHLPNYLPTQTHLR-HQHPQFPNFQPGIL 105
T L PS + +S AG + H P +LP+ T L+ H+ P + Q G+L
Sbjct: 754 TELPLLPSTLVELKISEAGFSVLPEVHAPRFLPSLTRLQIHKCPNLTSLQQGLL 807
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 119 ENWGTEDADDEDVSVWEDNWEDD 187
ENW ED+D ED +++ EDD
Sbjct: 199 ENWMEEDSDSEDEEYLDEDEEDD 221
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 200 HPVRCHLPNYLPTQTHLRHQHPQ-FPNFQ 117
+P R HLP Y P+ + HPQ P++Q
Sbjct: 20 NPRRAHLPQYGPSSSSSSFHHPQCAPHYQ 48
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 146 HQHPQFPNFQPGILQIHRPPPINRGLLFAYQPLWLRILLFII 21
H H Q P Q +PPP + L+ + PLW R LF++
Sbjct: 68 HPHSQHQPLLPTRRQQQQPPPPYQALVASLAPLW-REGLFLV 108
>04_04_1689 +
35379627-35379746,35379823-35380344,35380428-35380526,
35380608-35380979
Length = 370
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 125 WGTEDADDEDVSVWEDNWEDD 187
WGT+D DD+ E++ EDD
Sbjct: 328 WGTDDDDDDQQPAEEEDEEDD 348
>05_07_0193 -
28319783-28320211,28320798-28320925,28321543-28321888,
28322386-28322454
Length = 323
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 113 PAENWGTEDADDEDVSVWEDNWEDD 187
P G ++AD D W+DNW D+
Sbjct: 268 PLSTGGKKEADQSDQ--WDDNWGDE 290
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 26.2 bits (55), Expect = 9.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 315 EFFFLSDNICLDLFI 271
EF+F DN+C D+F+
Sbjct: 244 EFYFSKDNLCTDVFL 258
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 26.2 bits (55), Expect = 9.7
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Frame = -3
Query: 254 LCFAPSAFPTVVSTAG*NH----PVRCHLPNYLPTQTHLRHQHPQFPNFQPGI--LQIHR 93
+CF+ S S G N P H P Y P HP NFQ I Q+H
Sbjct: 298 VCFSSSNLHLERSNEGQNDASGTPPVYHFPFYYPGMMDHGMTHPPVQNFQGNINNAQVHT 357
Query: 92 P 90
P
Sbjct: 358 P 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,832,947
Number of Sequences: 37544
Number of extensions: 111792
Number of successful extensions: 468
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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