Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M06
(403 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2633| Best HMM Match : Drf_FH1 (HMM E-Value=4) 40 8e-04
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.27
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9) 31 0.27
SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_58341| Best HMM Match : Ribosomal_60s (HMM E-Value=8.4) 29 1.9
SB_61| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 28 2.5
SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07) 28 3.3
SB_4644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_25796| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 27 5.7
SB_3265| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_7686| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8) 27 7.6
SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
>SB_2633| Best HMM Match : Drf_FH1 (HMM E-Value=4)
Length = 179
Score = 39.9 bits (89), Expect = 8e-04
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = -3
Query: 200 HPVRCHLPNYLPTQTHLRHQHP---QFPNFQPGILQIHRP 90
HP++ HLPN LP + HL ++HP PN P +++H P
Sbjct: 116 HPIKVHLPNKLPIKVHLPNEHPIKVHLPNKHP--IKVHLP 153
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -3
Query: 242 PSAFPTVVSTAG*NHPVRCHLPNYLPTQTHLRHQHP---QFPNFQPGILQIHRP 90
P+ P V HP++ HLPN P + HL ++HP PN P +++H P
Sbjct: 123 PNKLPIKVHLPN-EHPIKVHLPNKHPIKVHLPNEHPIKVHLPNKHP--IKVHLP 173
Score = 37.1 bits (82), Expect = 0.005
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -3
Query: 200 HPVRCHLPNYLPTQTHLRHQHP---QFPNFQPGILQIHRP 90
HP++ HLPN P + HL ++HP PN P +++H P
Sbjct: 86 HPIKVHLPNKHPIKVHLPNEHPIKVHLPNEHP--IKVHLP 123
Score = 36.7 bits (81), Expect = 0.007
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -3
Query: 200 HPVRCHLPNYLPTQTHLRHQHP---QFPNFQPGILQIHRP 90
HP++ HLPN P + HL ++HP PN P +++H P
Sbjct: 12 HPIKVHLPNEHPIKVHLPNKHPIKVHLPNKHP--IKVHLP 49
Score = 36.7 bits (81), Expect = 0.007
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -3
Query: 200 HPVRCHLPNYLPTQTHLRHQHP---QFPNFQPGILQIHRP 90
HP++ HLPN P + HL ++HP PN P +++H P
Sbjct: 66 HPIKVHLPNKHPIKVHLPNKHPIKVHLPNKHP--IKVHLP 103
Score = 34.7 bits (76), Expect = 0.029
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = -3
Query: 200 HPVRCHLPNYLPTQTHLRHQHP---QFPNFQP--GILQIHRP 90
HP++ HLPN P + HL ++HP PN P +++H P
Sbjct: 32 HPIKVHLPNKHPIKVHLPNKHPIKVHLPNKHPIKHPIKVHLP 73
Score = 33.5 bits (73), Expect = 0.066
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 200 HPVRCHLPNYLPTQTHLRHQHP 135
HP++ HLPN P + HL ++HP
Sbjct: 156 HPIKVHLPNKHPIKVHLPNKHP 177
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -3
Query: 200 HPVRCHLPNYLPTQTHLRHQHP---QFPNFQPGILQIHRP 90
HP++ HLPN P + HL ++ P PN P +++H P
Sbjct: 106 HPIKVHLPNEHPIKVHLPNKLPIKVHLPNEHP--IKVHLP 143
Score = 29.9 bits (64), Expect = 0.81
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 191 RCHLPNYLPTQTHLRHQHP---QFPNFQPGILQIHRP 90
+ HLPN P + HL ++HP PN P +++H P
Sbjct: 5 KVHLPNKHPIKVHLPNEHPIKVHLPNKHP--IKVHLP 39
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 31.5 bits (68), Expect = 0.27
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = -3
Query: 230 PTVVSTAG*NHPVRCHLPNYLPTQTHLRHQHP 135
PT +ST G HPV C NY P QT +HP
Sbjct: 1851 PTGLST-GVIHPVTCTPGNYCPKQTGSEREHP 1881
>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
Length = 560
Score = 31.5 bits (68), Expect = 0.27
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 116 AENWGTEDADDEDVSVWEDNWEDDIVQDD 202
A+++ DADDED+++ +D+ +DD + D
Sbjct: 290 ADDYVNSDADDEDINIGDDDADDDDIYGD 318
Score = 30.7 bits (66), Expect = 0.46
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 128 GTEDADDEDVSVWEDNWEDDIVQDD 202
G +DADDED+++ +D+ DD + D
Sbjct: 397 GDDDADDEDINIGDDDAADDDIYGD 421
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 116 AENWGTEDADDEDVSVWEDNWEDDIVQDDF 205
A+++ DADDED++ +D +DD + D+
Sbjct: 164 ADDYVNSDADDEDINSDDDAADDDNINGDY 193
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 128 GTEDADDEDVSVWEDNWEDDIVQDD 202
G DADDED++ +D +DDI DD
Sbjct: 60 GDYDADDEDINGGDD--DDDIYGDD 82
>SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1014
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 173 YLPTQTHLRHQHPQFPNFQPGI 108
Y+P T RH HP+F + PGI
Sbjct: 790 YIPFDTE-RHYHPEFDGYHPGI 810
>SB_58341| Best HMM Match : Ribosomal_60s (HMM E-Value=8.4)
Length = 153
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 134 EDADDEDVSVWEDNWEDDIVQDDF 205
+D DD++V +D+ EDD++ DD+
Sbjct: 70 DDNDDDEVDDDDDDVEDDVLDDDY 93
>SB_61| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 134 EDADDEDVSVWEDNWEDDIVQDD 202
+D DD+D V +D+ +DD+V DD
Sbjct: 13 DDDDDDDDDVDDDDDDDDVVDDD 35
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 119 ENWGTEDADDEDVSVWEDNWEDDIVQDD 202
+ W ED DD+ W+D+ ED+ +D+
Sbjct: 1113 DKWEGEDEDDDIKESWDDDDEDEKKEDE 1140
>SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07)
Length = 352
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 203 NHPVRCHLPNYLPTQTHLRHQHPQFPN 123
NHP+RC+LP T+ +LR PN
Sbjct: 306 NHPLRCYLPAIKETKYNLRGTRYITPN 332
>SB_4644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 119 ENWGTEDADDEDVSVWEDN--WEDDIVQDD 202
E G ED DD+D S ED+ + DD++ DD
Sbjct: 16 EYHGDEDDDDDDKSSKEDDEIYCDDVIDDD 45
>SB_25796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 134 EDADDEDVSVWEDNWEDDIVQDD 202
+D DD+DV + +D+ +DD+ DD
Sbjct: 76 DDVDDDDVDIGDDD-DDDVNDDD 97
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 128 GTEDADDEDVSVWEDNWEDD 187
G+ED +DED S +D ++DD
Sbjct: 1312 GSEDIEDEDCSRRDDEYDDD 1331
>SB_3265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 107 LQIHRPPPINRGLLFAYQPLWLR 39
LQI P P+ YQPLW R
Sbjct: 64 LQIQIPSPLYHFTAIGYQPLWFR 86
>SB_7686| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 128 GTEDADDEDVSVWEDNWEDDIVQDD 202
G +D DD+D V +D+ +D+ V DD
Sbjct: 46 GDDDDDDDDEDVDDDDDDDEDVDDD 70
>SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8)
Length = 314
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Frame = -3
Query: 161 QTHLRHQHPQFPNFQPGILQI-------HRPPPINRGLLFA 60
+TH+ H Q P F P +L +P NRGL FA
Sbjct: 133 RTHVMHFSRQMPQFPPNVLNYVYASTSNRKPVTANRGLPFA 173
>SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 119 ENWGTEDAD-DEDVSVWEDNWEDDIVQDDF 205
E +G +D+D D+DV+ ++N +DD + DD+
Sbjct: 397 EGYGDDDSDIDDDVN--DNNDDDDYMMDDY 424
>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 134 EDADDEDVSVWEDNWEDDIVQDD 202
+D DD+DV +D+ +DD V DD
Sbjct: 1009 DDDDDDDVDDDDDDDDDDDVDDD 1031
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,242,513
Number of Sequences: 59808
Number of extensions: 140534
Number of successful extensions: 1681
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -