Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M06
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-3|AAK29724.3|   82|Caenorhabditis elegans Hypothetical ...    39   0.002
Z75527-1|CAA99774.1|  441|Caenorhabditis elegans Hypothetical pr...    30   0.54 
Z81135-3|CAB03456.1|  251|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm rec...    26   8.8  
AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm rec...    26   8.8  

>AC006714-3|AAK29724.3|   82|Caenorhabditis elegans Hypothetical
           protein Y119D3B.15 protein.
          Length = 82

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 113 PAENWGTE-DADDEDVSVWEDNWEDDIVQDDF 205
           P + W    + +++DV+VWEDNW+D+  + +F
Sbjct: 35  PVQEWAERAEGEEDDVNVWEDNWDDETHESEF 66


>Z75527-1|CAA99774.1|  441|Caenorhabditis elegans Hypothetical
           protein C15C8.1 protein.
          Length = 441

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 200 HPVRCHLPNYLPTQTH-LRHQHPQFPNFQPGI 108
           HP    +P+ +P+  H   H HPQ P   PGI
Sbjct: 375 HPQPMPIPHQVPSPAHGAAHGHPQAPPMYPGI 406


>Z81135-3|CAB03456.1|  251|Caenorhabditis elegans Hypothetical
           protein W01G7.4 protein.
          Length = 251

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 140 ADDEDVSVWEDNWEDDIVQDD 202
           ADDED S  EDNW +D   ++
Sbjct: 171 ADDEDDSNDEDNWRNDYPDEE 191


>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 134 EDADDEDVSVWEDNWEDDIVQDDF 205
           +D DDED   +ED+ E+D++ D++
Sbjct: 718 DDDDDEDCDDFEDD-EEDVIDDEY 740


>AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform b protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/16 (56%), Positives = 16/16 (100%)
 Frame = +3

Query: 312 ILSVIFNFSLMYVLLS 359
           I+S+IFNF+L+Y++L+
Sbjct: 16  IVSIIFNFTLIYLILT 31


>AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform a protein.
          Length = 341

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/16 (56%), Positives = 16/16 (100%)
 Frame = +3

Query: 312 ILSVIFNFSLMYVLLS 359
           I+S+IFNF+L+Y++L+
Sbjct: 16  IVSIIFNFTLIYLILT 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,492,978
Number of Sequences: 27780
Number of extensions: 107874
Number of successful extensions: 423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)