Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M06
(403 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam ... 34 0.031
At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam ... 34 0.031
At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam ... 34 0.031
At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to... 29 1.2
At5g64540.1 68418.m08111 hypothetical protein 29 1.5
At3g30340.1 68416.m03831 nodulin MtN21 family protein similar to... 29 1.5
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 29 1.5
At4g31630.1 68417.m04493 transcriptional factor B3 family protei... 28 2.0
At1g66070.1 68414.m07499 translation initiation factor-related s... 28 2.0
At5g60640.2 68418.m07611 thioredoxin family protein similar to p... 28 2.7
At5g60640.1 68418.m07610 thioredoxin family protein similar to p... 28 2.7
At5g37475.1 68418.m04510 translation initiation factor-related s... 27 4.7
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 27 4.7
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 27 4.7
At1g49920.1 68414.m05598 zinc finger protein-related weak simila... 27 6.2
At5g57790.1 68418.m08529 expressed protein 26 8.2
>At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 73
Score = 34.3 bits (75), Expect = 0.031
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 119 ENWGTEDADDEDVSV-WEDNWEDDIVQDDF 205
E+W E + ++VS+ WED+W+DD V DDF
Sbjct: 30 EDW-LEKEEVKEVSLQWEDDWDDDDVSDDF 58
>At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 34.3 bits (75), Expect = 0.031
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 119 ENWGTEDADDEDVSVWEDNWEDDIVQDDF 205
E+W ++ E WED+W+DD V DDF
Sbjct: 31 EDWLEKEEVKEVSQQWEDDWDDDDVNDDF 59
>At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 34.3 bits (75), Expect = 0.031
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 119 ENWGTEDADDEDVSVWEDNWEDDIVQDDF 205
E+W ++ E WED+W+DD V DDF
Sbjct: 31 EDWLEKEEVKEVSQQWEDDWDDDDVNDDF 59
>At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 305
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 75 SVYWRRTMNLKNSRLKIGELRMLMTKMCLCGKIIGKMTSYR 197
S W R N +N + K G L+++ T +C+ G ++ +T Y+
Sbjct: 56 SYIWERIENAQNLKSKAGVLKVMGTLICIMGAML--LTFYK 94
>At5g64540.1 68418.m08111 hypothetical protein
Length = 440
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 173 YLPTQTHLRHQHPQFPNFQPGILQIHRPPPINRGLLFAYQ 54
Y P Q H PQFP P LQ++ R L++ YQ
Sbjct: 206 YTPQQLPYDHYSPQFPCANPLHLQLYPYLHRPRSLIYVYQ 245
>At3g30340.1 68416.m03831 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 364
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/40 (30%), Positives = 27/40 (67%)
Frame = +3
Query: 78 VYWRRTMNLKNSRLKIGELRMLMTKMCLCGKIIGKMTSYR 197
V+ + T+N+K++ +G ++L T +C+CG ++ +T Y+
Sbjct: 121 VFRQETLNIKSN---VGRAKLLGTMICICGALV--LTLYK 155
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 203 NHPVRCHLPNYLPTQTHLRHQHPQFPNFQPGILQIHRP 90
+ P R PN P Q +PQFPN +P Q P
Sbjct: 395 SQPPRPQFPNQAPNQQSTGRFNPQFPNQRPSPPQSRFP 432
>At4g31630.1 68417.m04493 transcriptional factor B3 family protein
similar to reproductive meristem gene 1 from [Brassica
oleracea var. botrytis] GI:3170424, [Arabidopsis
thaliana] GI:13604227; contains Pfam profile PF02362: B3
DNA binding domain
Length = 512
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 131 TEDADDEDVSVWEDNWEDDIVQDD 202
T D DD++ +V++D+ +DD+ DD
Sbjct: 114 TSDDDDDERTVFDDDEDDDVGDDD 137
>At1g66070.1 68414.m07499 translation initiation factor-related
similar to Eukaryotic translation initiation factor 3
subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
(Swiss-Prot:O75822) [Homo sapiens]
Length = 226
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 122 NWGTEDADDEDVSVWEDNWEDD 187
NW ED D+ ++ +D+WEDD
Sbjct: 21 NWDDEDVDENEI---KDSWEDD 39
>At5g60640.2 68418.m07611 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 536
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 131 TEDADDEDVSVWEDNWEDDI 190
++D DDED+S ED EDD+
Sbjct: 29 SDDVDDEDLSFLEDLKEDDV 48
>At5g60640.1 68418.m07610 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 597
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 131 TEDADDEDVSVWEDNWEDDI 190
++D DDED+S ED EDD+
Sbjct: 29 SDDVDDEDLSFLEDLKEDDV 48
>At5g37475.1 68418.m04510 translation initiation factor-related
similar to Eukaryotic translation initiation factor 3
subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
(Swiss-Prot:O75822) [Homo sapiens]
Length = 225
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 122 NWGTEDADDEDVSVWEDNWEDDIV 193
NW ED D+ D+ +D+WE++ V
Sbjct: 21 NWDDEDVDENDI---KDSWEEEDV 41
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 119 ENWGTEDADDEDVSVWEDNWEDDIVQDD 202
+ + +D DDED S ED+++DD DD
Sbjct: 83 DEFSEDDYDDEDFS--EDDYDDDEFDDD 108
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 119 ENWGTEDADDEDVSVWEDNWEDDIVQDD 202
+ + +D DDED S ED+++DD DD
Sbjct: 182 DEFSEDDYDDEDFS--EDDYDDDEFDDD 207
>At1g49920.1 68414.m05598 zinc finger protein-related weak
similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
mays] GI:1857256; contains Pfam profiles PF03108: MuDR
family transposase, PF04434: SWIM zinc finger
Length = 785
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 128 GTEDADDEDVSVWEDNWEDDIVQDD 202
G +D ++ED V +D +DD V DD
Sbjct: 756 GDDDEEEEDDDVDDDEEDDDDVDDD 780
>At5g57790.1 68418.m08529 expressed protein
Length = 205
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 173 YLPTQTHLRHQHPQFPNFQPGILQIHRPPPIN 78
YL + T+L P F NF P +I PPP N
Sbjct: 30 YLKSDTYLFA--PLFSNFPPLTTEIDTPPPSN 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,912,761
Number of Sequences: 28952
Number of extensions: 96259
Number of successful extensions: 420
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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