Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M05
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 195 5e-51
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 85 9e-18
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 56 5e-09
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 55 8e-09
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 49 5e-07
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 44 1e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 4e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 4e-06
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 44 3e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 43 3e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 43 3e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 41 1e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 1e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 38 0.001
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 38 0.002
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.004
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 36 0.005
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 33 0.037
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 33 0.037
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.064
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 32 0.064
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 32 0.064
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.11
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.15
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 30 0.26
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 29 0.60
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 1.4
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 28 1.4
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.4
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 27 1.8
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 1.8
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 3.2
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 26 4.2
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 4.2
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 7.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 9.7
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 9.7
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 9.7
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 25 9.7
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 9.7
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 195 bits (475), Expect = 5e-51
Identities = 90/120 (75%), Positives = 100/120 (83%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
ASLYVG+L +TEAMLFE F+S GPV SIRVCRD +TRRSLGYAYVNF D E+ALD
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 483 SMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
+N+ +IKGRP RIMWSQRDPSLRK G GNVFIKNLD IDNKA++DTFSAFG ILSCKV
Sbjct: 140 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKV 199
Score = 57.6 bits (133), Expect = 1e-09
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++Y+ +L ++ITE + F G + S+ + +D + G+ +VN+ A++A+D
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDE 320
Query: 486 MNFDIIKGRPIRIMWSQ----RDPSLRK-------------SGVGNVFIKNLDKTIDNKA 614
+N KG+ + + +Q R+ LRK GV N+FIKNL +D++
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV-NLFIKNLQDEVDDER 379
Query: 615 MYDTFSAFGNILSCKV 662
+ FSAFG I S K+
Sbjct: 380 LKAEFSAFGTITSAKI 395
Score = 51.6 bits (118), Expect = 1e-07
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++++ +L I L + FS+ G +LS +V D + GY +V+F A A++
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAK-GYGFVHFDSVESANAAIEH 227
Query: 486 MNFDIIKGRPIRIMW--SQRDPSLR----KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNI 647
+N ++ + + + S+R+ + K+ NV+IKNLD I + D F FG I
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI 287
Query: 648 LS 653
S
Sbjct: 288 TS 289
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 85.0 bits (201), Expect = 9e-18
Identities = 39/116 (33%), Positives = 67/116 (57%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
A++Y+G+L +T+++LFE AGPV++I + RD + G+ + F D E A
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70
Query: 483 SMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNIL 650
+N + G+PIR+ + +D + N+F+ NLD +D + +YDTFSA G ++
Sbjct: 71 ILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLV 126
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSI-RVCRDMITRRSLGYAYVNFQQPADAERAL 479
A+L+VG+L + E +L++ FS+ G ++ +V RD RS GY +V++ A+ A+
Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDE-NGRSKGYGFVSYDSFETADAAI 157
Query: 480 DSMNFDIIKGRPIRIMWS 533
++MN + +PI + ++
Sbjct: 158 EAMNNQFLMNKPITVSYA 175
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 56.0 bits (129), Expect = 5e-09
Identities = 34/128 (26%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Frame = +3
Query: 294 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
Y +L++G+L +TEA + + +++ G + +++ R+ T + GY +V F P +A
Sbjct: 90 YQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASS 149
Query: 474 ALDSMNFDIIKG--RPIRIMWSQ----RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSA 635
A+ SMN I G ++ W+ R+ S+ K+ ++F+ +L ++ +Y F++
Sbjct: 150 AM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFAS 208
Query: 636 FGNILSCK 659
N SCK
Sbjct: 209 RYN--SCK 214
Score = 43.6 bits (98), Expect(2) = 2e-06
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSA-GPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
S++VGDL ++ E ++ F+S S ++ D T S GY +V F D + AL
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 483 SMNFDIIKGRPIRI 524
M I RPIR+
Sbjct: 247 EMQGQICGDRPIRV 260
Score = 23.0 bits (47), Expect(2) = 2e-06
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = +3
Query: 531 SQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
+Q P + VF+ L K + + + F FG I+ K+
Sbjct: 291 AQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI 334
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 55.2 bits (127), Expect = 8e-09
Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCR-DMITRRSLGYAYVNFQQPADAERAL 479
A+++VG+L +TE++L+ F G ++S+ + R + RS YA+V F +P DA+ A+
Sbjct: 6 ATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRS--YAFVEFDEPEDAKEAM 63
Query: 480 DSMNFDIIKGRPIRI 524
++MN+ I+ R IR+
Sbjct: 64 ENMNYSILCDRCIRV 78
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 49.2 bits (112), Expect = 5e-07
Identities = 30/79 (37%), Positives = 46/79 (58%)
Frame = +3
Query: 288 PNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 467
P+ P + +VG+L D+TE L + F V SIR+ D +T RS G+ YV F + AD
Sbjct: 89 PSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEF-ETADT 145
Query: 468 ERALDSMNFDIIKGRPIRI 524
A +++ + + GRP+RI
Sbjct: 146 LSAALALSGEDLMGRPVRI 164
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 44.0 bits (99), Expect(2) = 1e-06
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
P S++VGDL ++ LF F S P S ++ D +T S Y +V F + +
Sbjct: 180 PEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQH 239
Query: 474 ALDSMNFDIIKGRPIRIMWSQRDPSLRKS 560
AL M + +GRP+RI S P R S
Sbjct: 240 ALMHMQGYLCQGRPLRI--SVASPKSRAS 266
Score = 23.4 bits (48), Expect(2) = 1e-06
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 573 VFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
VF+ L + K + F FG IL+ K+
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKI 328
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P +++VG+L + TE L F G + SIR+ D + R G+ YV F A++
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC 423
Query: 477 LDSMNFDIIKGRPIRIMWS 533
++ MN I GRP R+ +S
Sbjct: 424 VE-MNGHFIAGRPCRLDFS 441
Score = 45.6 bits (103), Expect = 6e-06
Identities = 25/90 (27%), Positives = 45/90 (50%)
Frame = +3
Query: 279 PGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 458
P + +++VG L ++ + L ++F G ++ RV D + RS GY YV+F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 459 ADAERALDSMNFDIIKGRPIRIMWSQRDPS 548
A+ A+ + I GR + + S P+
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPA 344
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.4 bits (105), Expect = 4e-06
Identities = 23/74 (31%), Positives = 43/74 (58%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P ++++ L D E+ + +F+ GP+ IRV R+ +T +S+GYA+V F++ D + A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 477 LDSMNFDIIKGRPI 518
+ ++ GR I
Sbjct: 158 YKASAGLMLNGRRI 171
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG++ D++E + E F+ GPV + ++ D T GY + F A+ +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 489 NFDIIKGRPIRIMWSQRDPSLRKS 560
N + R IR+ + DP +S
Sbjct: 69 NNSELGPRKIRVEFPSNDPRRNQS 92
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG+L + E L+ F G + +R+ RD T G+AY+ F+ ++AL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 489 NFDIIKGRPIRIM 527
+ +GR +RIM
Sbjct: 332 EKKMPEGRTLRIM 344
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 43.2 bits (97), Expect = 3e-05
Identities = 23/79 (29%), Positives = 44/79 (55%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
+++V L + +T L++ F AGPV ++ RD I+ RS G AYV F D+ +A +
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCH-EDSVQAAIA 299
Query: 486 MNFDIIKGRPIRIMWSQRD 542
++ + G P+ + ++ +
Sbjct: 300 LSGKRLLGLPVIVQLTEAE 318
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.1 bits (92), Expect = 1e-04
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
A +Y+G+L D+ E + FS G + I + RD T +S G+A++ ++ A+D
Sbjct: 31 AYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVD 90
Query: 483 SMNFDIIKGRPIRI 524
+M + R +R+
Sbjct: 91 NMTNVKLLDRLVRV 104
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P +YVG++ ++ E + + F +GPV S ++ D + + GY + + PA A A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 477 LDSMN 491
+ ++N
Sbjct: 63 VRNLN 67
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 40.3 bits (90), Expect = 2e-04
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +3
Query: 270 KMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNF 449
K G N L+VG+L D + L F AG V S+R+ D + R GYA+V F
Sbjct: 81 KRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
Query: 450 QQP-ADAERALDSMNFDIIKGRPIRI 524
P D + I K R I I
Sbjct: 141 INPKTDVISKALKFHHTIYKERKINI 166
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
+++V +L + TE L+ F GP+ ++ +D T RSLG ++ F+ D + L+
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
++L+V +L + L FS GP+ V + T + GY +V F DA+RA
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 483 SMNFDIIKGRPIRI 524
+ + GR +R+
Sbjct: 65 ELKNKKLHGRILRL 78
Score = 33.5 bits (73), Expect = 0.028
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 363 FSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRIMWS 533
FS G V I++ R G+A+V + AE A++S+N I GRPI + W+
Sbjct: 128 FSKFGKVREIKIPTKG-GGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
LYVG L E + FS GPVL +R+ R+ T S YA++ F+ A ++M
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 489 NFDIIKGR 512
+ ++ G+
Sbjct: 167 HNYLLYGK 174
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Frame = +3
Query: 276 NPGPPNYPM--ASLYVGDLHSDIT--EAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 443
+P PN P+ ++LYV +L + ++ L + FS G +LS + + S GY +V
Sbjct: 371 SPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFV 430
Query: 444 NFQQPADAERALDSMNFDIIKGRPIRIMWSQR 539
F+Q A RA D++N ++ + I + +++R
Sbjct: 431 AFRQIEAAVRAKDTLNGMMVGKKRIFVCFAER 462
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 279 PGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSI 392
PG +++YVG++ S +++ + + FS G V SI
Sbjct: 9 PGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
+ V +H + TE + + F+ GPV ++ + D T GYA + + A++A+D
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 489 NFDII 503
N ++
Sbjct: 72 NLSLL 76
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 35.9 bits (79), Expect = 0.005
Identities = 24/104 (23%), Positives = 44/104 (42%)
Frame = +3
Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGY 434
NS + PG P A + V ++ + + L + F G G
Sbjct: 187 NSNSTPVEPGEDTIPTA-IVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGL 245
Query: 435 AYVNFQQPADAERALDSMNFDIIKGRPIRIMWSQRDPSLRKSGV 566
A+ NF +P +A+ + ++N I GR +R+ W ++ P+ + V
Sbjct: 246 AFANFYRPEEAQVVVQTLNGYEINGRRLRVEWKRQLPAAEREKV 289
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 33.1 bits (72), Expect = 0.037
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 351 LFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPI 518
+F +FS G V + VC D + +G YV F+ A+ A+D +N RP+
Sbjct: 80 MFCEFSKYGEVEQLVVC-DNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPV 134
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 33.1 bits (72), Expect = 0.037
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 429 GYAYVNFQQPADAERALDSMNFDIIKGRPIRIMWSQRDPSLRKSGV 566
G A+ NF P +A+ + +N I GR +R+ W ++ P + V
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERV 319
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 32.3 bits (70), Expect = 0.064
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Frame = +3
Query: 423 SLGYAYVNFQQPADAERALDSMNFDIIKGRPIRIMWS----------QRDPSLRKSGVGN 572
S+G+ +V F+ A A A+ +MN ++ G + I S ++ S + G
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGT-K 722
Query: 573 VFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
+ IKNL K + A+G + S +V
Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRV 752
Score = 30.3 bits (65), Expect = 0.26
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
L++ +L E L F G + + + D T G+AY++F DA RA +
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384
Query: 489 NFDIIKGRPIRIM 527
+ +GR + ++
Sbjct: 385 DAKPFQGRLLHVL 397
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 32.3 bits (70), Expect = 0.064
Identities = 26/104 (25%), Positives = 46/104 (44%)
Frame = +3
Query: 294 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
Y LYV ++ + E + F G V S+R+ + + GY + Q DAE
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQ--DAEN 811
Query: 474 ALDSMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTID 605
AL + + R + ++ S+ SL K+ V + + L K+ +
Sbjct: 812 ALSAAGKQ-LGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFE 854
Score = 30.7 bits (66), Expect = 0.20
Identities = 27/118 (22%), Positives = 54/118 (45%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++ V +L SDI+E L F G ++ I + D ++ + A + F + ++ A +
Sbjct: 591 TVLVTNLPSDISENELKIFFKDCGNIIRIFILED--NQKDVKVAQIEFSETSEV-LAAKT 647
Query: 486 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCK 659
+ I+G I S++ N+++ N T D + FSA+GN++ +
Sbjct: 648 RDLKSIRGHEI---------SVQIHVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVR 696
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 32.3 bits (70), Expect = 0.064
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFE----KFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 464
P +LY+ ++ I ML F S G V+ ++ + T R G A+V F +
Sbjct: 24 PSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARK---TLRMRGQAFVVFDNLEN 80
Query: 465 AERALDSMNFDIIKGRPIRIMWSQ 536
A RAL + + G+P+ I +S+
Sbjct: 81 ASRALKDLQGYPLYGKPMMIQYSK 104
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.5 bits (68), Expect = 0.11
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++Y+G++H+D T + G + +IR ++ +V F P A R +
Sbjct: 324 TVYIGNIHADTTIEEICNAVRG-GLLHNIRYLQEK------HICFVTFVDPVSAFRFFEM 376
Query: 486 MNFD--IIKGRPIRIMWSQRD---PS---LRKSGVG--NVFIKNLDKTIDNKAMYDTFSA 635
N +I+ R ++I W + PS L +G N++I N D ++ + + + F
Sbjct: 377 SNIHGLVIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEE 436
Query: 636 FGNI 647
FG I
Sbjct: 437 FGEI 440
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/78 (26%), Positives = 41/78 (52%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++++G+L + ITE + E GP+ I++ +T R++ A+V+F A A +A+
Sbjct: 207 NVFLGNLPNGITEDEIREDLEPFGPIDQIKI----VTERNI--AFVHFLNIAAAIKAVQE 260
Query: 486 MNFDIIKGRPIRIMWSQR 539
+ P+ WS+R
Sbjct: 261 L--------PLNPKWSKR 270
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P +L+VG+L S ++ + FS+ G V SIR M++ + A++NF A+
Sbjct: 585 PTHALWVGNLPSGVSATTVATTFSAYGTVSSIR----MLSHKH--SAFLNFDSVETAKHV 638
Query: 477 LDSMN 491
L+ +N
Sbjct: 639 LEELN 643
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 30.3 bits (65), Expect = 0.26
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSL-GYAYVNFQQPADA-ERALD 482
+YVG L S I + L +FS G V ++ + ++ +AY+NF+ D ++
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCKS 66
Query: 483 SMNFDIIKGRPIRI 524
++ KG +RI
Sbjct: 67 YLSNATFKGSKLRI 80
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.60
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +3
Query: 552 RKSGVGNVFIKNLD----KTIDNKAMYDTFSAFGNILSCK 659
+K+G G+V I +L+ +TI NK+ FS F N++ K
Sbjct: 215 QKTGSGDVIISDLEMDPNQTISNKSASSAFSLFSNLIGGK 254
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 649 NMFPNAENVSYIALLSIVLSRFLIKTFPTPD 557
N F + N Y++ ++V SRF TFP+ D
Sbjct: 262 NYFLDLNNAEYVSHFALVHSRFSTNTFPSWD 292
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Frame = +3
Query: 498 IIKGRPIRIMWSQRDP---SLRK-----SGVGNVFIKNLDKTIDNKAMYDTFSAFGNILS 653
I GRP+++ +++ P S++ + NVFI NL + K + + F FG I
Sbjct: 268 IFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEH 327
Query: 654 CKV 662
K+
Sbjct: 328 IKI 330
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 177 SKECYSHLEKVKFFIAHILLMST*NCNSKIFKMNP 281
SK Y H+ FF H+LL S+ N K F + P
Sbjct: 240 SKLPYFHILDKSFFSPHLLLQSSENQACKFFNIGP 274
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = +3
Query: 273 MNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ 452
M P P + +ASL++ + ++ + + + F GP+ S+ VC + R+ A+VNF+
Sbjct: 203 MEP-PKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSV-VC----SHRA-KCAFVNFK 255
Query: 453 QPADAE--RALDSMNFDIIKGRPIRIMWSQ 536
+ AE A +I+G +++ W +
Sbjct: 256 TRSSAEIAAAASPDGNVVIEGFRLKVQWGK 285
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 417 RRSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRI 524
R + G V F D AL S+N ++IKG+ + +
Sbjct: 131 RENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTL 166
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 543 PSLRKSGVGNV-FIKNLDKTIDNKAMYDTFSAFGNI 647
PS V ++ FIKNL I + MYD F +G +
Sbjct: 3 PSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPV 38
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 567 GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
G +FI L+ + ++ D F FG +L C V
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTV 194
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 462 DAERALDSMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDK 596
+ AL S N+DI+ + I SQRD ++ G V+ + K
Sbjct: 309 EVSAALASGNYDIVSSKKSTIEQSQRDMRKKEEAEGAVWARRYFK 353
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 427 SDLRVIISRQTRIERTGPAEENFSNNMASVMSECKSPT 314
S L S++ +I T P E+++ M S+++ C +PT
Sbjct: 239 SGLTFYDSKREKICFTFPGEKHYMTVMGSILALCYTPT 276
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 9.7
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = +3
Query: 276 NPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQ 455
NP N P ++YVG+L +E L FS+ V R+C T+ + +V F+
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLFST--QVGYKRLC--FRTKGNGPMCFVEFEN 472
Query: 456 PADAERALDSMN----FDIIKGRPIRIMWSQRDPSLRKS 560
A AL ++ IKG IR+ +S+ +R S
Sbjct: 473 IPYAMEALKNLQGVCLSSSIKG-GIRLSFSKNPLGVRSS 510
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDM 410
SLYV D S E+ LF KF + G LSI D+
Sbjct: 895 SLYVDDGVSIQQESTLFVKFVANGDSLSIESYGDL 929
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 9.7
Identities = 24/79 (30%), Positives = 36/79 (45%)
Frame = +3
Query: 315 VGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNF 494
V +LH + E + F + P+ I + D RS G V F+ DAE A ++
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPIRVI-MNYDR-AGRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 495 DIIKGRPIRIMWSQRDPSL 551
+KG I+I + PSL
Sbjct: 147 TNLKGSEIQIS-KKSPPSL 164
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 558 SGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
+G NV I+NL + + T FG IL+C+V
Sbjct: 97 AGPTNVVIENLAPGTSSDDVAATLLNFGEILNCQV 131
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 468 QHQQAVENLHKRSLVIYELS 409
+ Q+ +ENLHK S+ I +LS
Sbjct: 212 EEQKMIENLHKHSVQIDDLS 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,271
Number of Sequences: 5004
Number of extensions: 45156
Number of successful extensions: 161
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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