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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M05
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)                      123   1e-28
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       94   1e-19
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       64   7e-11
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)               63   2e-10
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               56   3e-08
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 50   1e-06
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)                 48   5e-06
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)                        48   7e-06
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               48   9e-06
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)                 48   9e-06
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)                 48   9e-06
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)                 47   2e-05
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)                 46   3e-05
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)                46   3e-05
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   8e-05
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)                 44   1e-04
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                        42   4e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)                  40   0.001
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.001
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)                 40   0.002
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 38   0.006
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)                38   0.007
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 37   0.017
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.029
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)                 36   0.029
SB_76| Best HMM Match : No HMM Matches (HMM E-Value=.)                 35   0.051
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.068
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)                 33   0.27 
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)                  32   0.36 
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)                  32   0.36 
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)                 32   0.48 
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)                  31   0.63 
SB_15485| Best HMM Match : DUF28 (HMM E-Value=9.6)                     31   0.63 
SB_46269| Best HMM Match : APG5 (HMM E-Value=8.2)                      31   0.84 
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_13874| Best HMM Match : YTV (HMM E-Value=5.2)                       31   1.1  
SB_57035| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_51729| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=1.2)            30   1.5  
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)                       30   1.5  
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_47978| Best HMM Match : W2 (HMM E-Value=4.7)                        30   1.9  
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)                   30   1.9  
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)                   30   1.9  
SB_30663| Best HMM Match : rve (HMM E-Value=3.3e-25)                   30   1.9  
SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)                   30   1.9  
SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)           30   1.9  
SB_40318| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_38075| Best HMM Match : ELK (HMM E-Value=8.7)                       30   1.9  
SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)            30   1.9  
SB_37544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)           29   2.6  
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_40242| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1)             29   3.4  
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)                     29   3.4  
SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 29   4.5  
SB_42814| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.4e-09)           29   4.5  
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)                   28   5.9  
SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 718

 Score =  123 bits (297), Expect = 1e-28
 Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 10/140 (7%)
 Frame = +3

Query: 273 MNP--GPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVN 446
           MNP  G  NYP+ASLYVGDL  D+TEAML+EKFS+AG VLSIRVCRD++TRRSLGYAYVN
Sbjct: 1   MNPSTGAANYPIASLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVN 60

Query: 447 FQQPAD--AERALDSMNFDIIKGRPIRI-MWSQRDPSLRKSGV-----GNVFIKNLDKTI 602
           FQQP    A  A+  ++  ++  + + +  W  +   + K G       NV++KN    +
Sbjct: 61  FQQPGHDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKMGTQPKKFTNVYVKNFGDDM 120

Query: 603 DNKAMYDTFSAFGNILSCKV 662
           D++ M +  +  G I+S KV
Sbjct: 121 DDEQMKEICAEAGKIVSLKV 140



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 17/151 (11%)
 Frame = +3

Query: 261 KIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAY 440
           +I KM   P  +   ++YV +   D+ +  + E  + AG ++S++V  D    +S G+ +
Sbjct: 97  RIEKMGTQPKKF--TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDP-EGKSKGFGF 153

Query: 441 VNFQQPADAERALDSMNFDIIKGRPI-----------------RIMWSQRDPSLRKSGVG 569
           V+F+ P +AE A++ +N   I GR +                  I   +++   R  GV 
Sbjct: 154 VSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGV- 212

Query: 570 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
           N++IKNLD  ID++ + + FS +G I S KV
Sbjct: 213 NLYIKNLDDPIDDERLREEFSPYGTISSAKV 243



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 25/78 (32%), Positives = 43/78 (55%)
 Frame = +3

Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
           +LY+ +L   I +  L E+FS  G + S +V +D     S G+ +V F  P +A +A+  
Sbjct: 213 NLYIKNLDDPIDDERLREEFSPYGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATKAVTE 271

Query: 486 MNFDIIKGRPIRIMWSQR 539
           MN  I+  +P+ +  +QR
Sbjct: 272 MNGRILISKPLYVALAQR 289


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
 Frame = +3

Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
           A++YVG L   ++EA+++E F  +GPV+++ + +D IT+   GY +V F    DA+ A+ 
Sbjct: 13  ATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIK 72

Query: 483 SMNFDIIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKTIDNKAMYDTFSAFGNIL 650
            MN   + G+PIR+  ++     +   VG N+FI NLD  +D K +YDTFSAFG IL
Sbjct: 73  VMNMIKVYGKPIRV--NKASAHNKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVIL 127



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/83 (30%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
 Frame = +3

Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSI-RVCRDMITRRSLGYAYVNFQQPADAERAL 479
           A+L++G+L +++ E +L++ FS+ G +L   ++ RD  T  S G+A++NF     ++ A+
Sbjct: 100 ANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAI 159

Query: 480 DSMNFDIIKGRPIRIMWSQRDPS 548
           ++MN   +  RPI + ++ +  S
Sbjct: 160 EAMNGQYLCNRPITVSYAFKKES 182


>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 32/72 (44%), Positives = 46/72 (63%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
           LYVG LH +ITEAM+   F   G V S+++  D  T RS GY +V F++   A+RA++ M
Sbjct: 244 LYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQM 303

Query: 489 NFDIIKGRPIRI 524
           N   + GRP++I
Sbjct: 304 NGFELAGRPLKI 315



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 23/79 (29%), Positives = 39/79 (49%)
 Frame = +3

Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
           +++   L  +I    L E FS  G V  +R+  D  +RRS G AY+ F   +    A+  
Sbjct: 147 TVFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAVPLAI-G 205

Query: 486 MNFDIIKGRPIRIMWSQRD 542
           ++   + G PI +M +Q +
Sbjct: 206 LSGQKLLGAPIMVMLTQAE 224


>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 32/100 (32%), Positives = 57/100 (57%)
 Frame = +3

Query: 363 FSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRIMWSQRD 542
           F + G V S ++ RD  T +SLGYA+VN+  P DA +A+  MN   ++ + +++ +++  
Sbjct: 47  FGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFAR-- 104

Query: 543 PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
           PS  +    N++I  L K +  + +   F  FG I++ KV
Sbjct: 105 PSSTEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKV 144


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
 Frame = +3

Query: 288 PNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 467
           P     SLYVG+L    T+ ++   F+    V+  ++      +    Y +V F+  ADA
Sbjct: 364 PEEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGP--YCFVEFETHADA 421

Query: 468 ERALDSMNFDIIKGRPIRIMWSQRDPSLRKSGVGN---VFIKNLDKTIDNKAMYDTFSAF 638
           + A   M+   +  + +++ W+   P +++    N   +F+ +L + +DN  +  TF  F
Sbjct: 422 QEAKFRMDQRTVMDKKLKVNWATNHPGMKRGDTNNHFHIFVGDLAENVDNALLRKTFEPF 481

Query: 639 GNI 647
           G I
Sbjct: 482 GEI 484


>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 26/119 (21%), Positives = 61/119 (51%)
 Frame = +3

Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
           +L V  +  D+T+      F +   + + ++ R   +  S G+ +V++    DA++A+D 
Sbjct: 48  TLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDK 107

Query: 486 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
           +N   I  + +++ +S+  P    +   N+++ N+ K +        F A+GNI++C++
Sbjct: 108 LNGFTIGNKVLKVAFSR--PGGDNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRL 164



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 25/99 (25%), Positives = 47/99 (47%)
 Frame = +3

Query: 261 KIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAY 440
           K+    PG  N   A+LYV ++   + EA   + F + G +++ R+ RD  T    G  +
Sbjct: 119 KVAFSRPGGDNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGF 178

Query: 441 VNFQQPADAERALDSMNFDIIKGRPIRIMWSQRDPSLRK 557
           V + + A+A+ A+ S++     G  + +     D +  K
Sbjct: 179 VLYDKKAEAQAAISSLSGTFFPGSTMGLQIRYADDNSAK 217


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/85 (29%), Positives = 46/85 (54%)
 Frame = +3

Query: 270 KMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNF 449
           K + G  +  + S++VG++  + +E  L E FS  GPV+S R+  D  T +  GY +  +
Sbjct: 14  KQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEY 73

Query: 450 QQPADAERALDSMNFDIIKGRPIRI 524
           +    A  A+ ++N   + GR +R+
Sbjct: 74  KDQETALSAMRNLNGYELNGRALRV 98


>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
          Length = 407

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 31/80 (38%), Positives = 43/80 (53%)
 Frame = +3

Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
           S+++G+L  DI E  L E F++ G V S+R+ RD  T    G+ YV F+       AL  
Sbjct: 57  SVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFAL-K 115

Query: 486 MNFDIIKGRPIRIMWSQRDP 545
           MN    KGR IR+  S+  P
Sbjct: 116 MNNAEFKGRKIRVFPSKDKP 135



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/75 (28%), Positives = 39/75 (52%)
 Frame = +3

Query: 438 YVNFQQPADAERALDSMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAM 617
           YV ++   +A +A+ S N + I G  IR+  +  D +       +VFI NL   I+ + +
Sbjct: 16  YVVYKAAENANQAIAS-NGEEIDGFHIRVDLASNDKA--HDHQRSVFIGNLPFDIEEEPL 72

Query: 618 YDTFSAFGNILSCKV 662
            + F+  GN+ S ++
Sbjct: 73  RELFTTCGNVESVRL 87


>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 593

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
 Frame = +3

Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
           M  +YVG ++ ++ E  +   F   GP+  I +  D +  +  G+A+V +  P  A+ AL
Sbjct: 101 MCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLAL 160

Query: 480 DSMNFDIIKGRPIRIMWSQRDPSL---------RKSGVGNVFIKNLDKTIDNKAMYDTFS 632
           + MN  ++ GR I++      P                  ++I ++   +    +   F 
Sbjct: 161 EQMNGVLLGGRNIKVGRPSNVPQAAPLIEQFEQEAKKYARIYIASVHPDLLEDDIKSVFE 220

Query: 633 AFGNILSCKV 662
           AFG ++ C +
Sbjct: 221 AFGKVVHCSL 230



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/74 (24%), Positives = 39/74 (52%)
 Frame = +3

Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
           A +Y+  +H D+ E  +   F + G V+   + ++ +T +  GY ++ ++    A  A+ 
Sbjct: 199 ARIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIA 258

Query: 483 SMNFDIIKGRPIRI 524
           SMN   + G+ +R+
Sbjct: 259 SMNLFDLGGQFLRV 272


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 22/71 (30%), Positives = 37/71 (52%)
 Frame = +3

Query: 312 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMN 491
           YVG L  ++ E +L   F   G +  +++  D  T +  G+ +V F+   D   A+D+MN
Sbjct: 8   YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67

Query: 492 FDIIKGRPIRI 524
              + GR IR+
Sbjct: 68  ESELFGRTIRV 78


>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
          Length = 168

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
 Frame = +3

Query: 279 PGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 458
           P PP      ++VG +  D+ E  L   F +AGP+  +R+  D    ++ GYA+V +   
Sbjct: 68  PIPPRG--CEVFVGKIPRDLYEDELVPVFETAGPIYEVRLMMD-FNGQNRGYAFVVYTSK 124

Query: 459 ADAERALDSM-NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKN 587
            DA+R + ++ N++I KG+ I +  S     L  +G+  V + N
Sbjct: 125 DDAKRCVKTLNNYEIRKGKCIGVCSSVDKSLLVPTGMNGVDLLN 168


>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
          Length = 209

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 29/76 (38%), Positives = 41/76 (53%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
           L+V  L+   T+  L   FS  G +LS  V RD  T  SL YA++ F++  D ERA   M
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKM 181

Query: 489 NFDIIKGRPIRIMWSQ 536
           +  +I  R I + +SQ
Sbjct: 182 DNVLIDDRRIHVDFSQ 197


>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
          Length = 304

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/74 (31%), Positives = 41/74 (55%)
 Frame = +3

Query: 270 KMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNF 449
           K + G   +  A++ V +L  +  E+ L E F   GP+  I + +D  T +S G+A++NF
Sbjct: 170 KEDDGSGQHETATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINF 229

Query: 450 QQPADAERALDSMN 491
               DA RA++ ++
Sbjct: 230 VHREDAARAIEVLS 243


>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
          Length = 159

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 23/75 (30%), Positives = 39/75 (52%)
 Frame = +3

Query: 312 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMN 491
           Y+G+L   + E  L EKF     V+ ++V  D  T R  G+ +V F    + E+A+D  +
Sbjct: 8   YIGNLSYSVDEQALEEKFHGCD-VVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFD 66

Query: 492 FDIIKGRPIRIMWSQ 536
                GRP+++  +Q
Sbjct: 67  GQDFDGRPMKVNQAQ 81


>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +3

Query: 285 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 464
           P +  + +LYVG L   +TE  L + F   G + SI     M+ R++   A+V F   A 
Sbjct: 298 PTDRSITTLYVGGLEGKVTEQDLRDHFYQFGELRSI----SMVPRQNC--AFVCFTSRAA 351

Query: 465 AERALD-SMNFDIIKGRPIRIMWSQ 536
           AE A D S N  I+KGR ++IMW +
Sbjct: 352 AEAAADRSFNKLILKGRRLKIMWGK 376


>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
          Length = 672

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
           ++ GDL S++T+  L   F+     L  ++ RD  + +S GY +V+F+ P D  +A+  M
Sbjct: 219 IFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREM 278

Query: 489 N 491
           N
Sbjct: 279 N 279


>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
 Frame = +3

Query: 267 FKMNPGPPNYP-MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 443
           F    GPP    M SL V +L    T   L + F   G +  I + RD  T  S G+A+V
Sbjct: 3   FDSQRGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFV 62

Query: 444 NFQQPADAERALDSMNFDIIKGRPIRIMWSQRDPSLRKSGVG-NVFIKNLDKTIDNKA 614
            F +  DAE A+D M+   +        W  RD  + +  +G  V +  ++  + ++A
Sbjct: 63  RFYEKRDAEDAMDCMDATCLMAEKFVFRW--RDMVVPRIPIGRGVLVVMVEVLVTDRA 118


>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
 Frame = +3

Query: 162 KRATWSKECYSHLEKV----KFFIAHILLMST*NCNSKIFKMNPGPPNYPMASLYVGDLH 329
           +R T  +E   HL++     K FI+++L   T +      K +  P +    +L+V +L 
Sbjct: 122 ERQTEEEELPKHLDRSSDPRKVFISNLLFSITEDHLRD--KFSKFPTSLDKHTLFVSNLP 179

Query: 330 SDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKG 509
            D  E+ + E FS  G V  +R+  +   +   GY YV ++Q + A  A+ +++   +KG
Sbjct: 180 FDAKESEIEELFSKHGVVKQVRLVTNRAGKPK-GYGYVEYEQESSASTAVLTLDKTEVKG 238

Query: 510 RPIRIMWS 533
           R I +  S
Sbjct: 239 RTISVALS 246


>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
          Length = 343

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
 Frame = +3

Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
           +++VG LH    E+ +FE FS+ G  +    C   ++ +S G+A+V  ++    + A++S
Sbjct: 43  TIFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRTLSGKSKGFAFVRLRK----KEAVES 98

Query: 486 MNFDIIKGRPIRIMWSQRDPSLRKSGV-GNVFIKNLDKTIDNKAMYDTFSAFGNILS 653
                + GR   ++    D S+ K      V +KN+  +I    + + FS+ G I S
Sbjct: 99  -----VLGRDDHVI-DNSDVSMEKQDTYRKVILKNIPSSIGESQILEHFSSSGEIAS 149


>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
 Frame = +3

Query: 228 ILLMST*NCNSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRD 407
           I  ++T   + K   ++P PP    + L+VG+L  + TE    +  S  G +  + + R 
Sbjct: 91  ISFLNTCKYHDKTLNVSPAPPE---SLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRS 147

Query: 408 MITRRSLGYAYVNF---QQPADAERALDSMNFDIIKGRPIRIMWSQRDPSLRKSGVGN-- 572
            +T  S GY +V +   +    A++ L +     I GR +R+ +++ +  L  + V +  
Sbjct: 148 EVTGDSKGYGFVEYATRENAMQAKQQLLNTASKYIGGRILRVAFAESN-LLTYADVHSRT 206

Query: 573 VFIKNLDKTIDNKAMY-DTFSAFGNILSCKV 662
           +F+  L +   N  +  + FS  GN+   +V
Sbjct: 207 LFVDRLPRDFKNGGLIKELFSQTGNVTFAQV 237



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 306 SLYVGDLHSDITEAMLF-EKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
           +L+V  L  D     L  E FS  G V   +V  +     S G+A+V++    +AE+   
Sbjct: 206 TLFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQR 265

Query: 483 SMNFDIIKGRPIRIMW 530
           + N   ++G  IR+ +
Sbjct: 266 AHNGRQVEGSNIRVAY 281


>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +3

Query: 288 PNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITR-RSLGYAYVNFQQPAD 464
           P     +++V +L  +IT+A     F   GP+    + +D   + R  G+ YV F    D
Sbjct: 15  PVISKTTIFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEED 74

Query: 465 AERALDSMNFDIIKGRPIRIMWSQR 539
           A +A D  N   IKGRPI + +S++
Sbjct: 75  ALKAKD--NIKSIKGRPIHLDFSEK 97



 Score = 35.5 bits (78), Expect = 0.039
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
 Frame = +3

Query: 258 SKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYA 437
           SK   +   P      ++ +  L + ITE  ++++    G V         +       A
Sbjct: 145 SKSKSLRKAPQTDAGRTVILSGLPASITEKQIYKRCRKLGEVEKTIF---PVAGHDSPTA 201

Query: 438 YVNFQQPADAERALDSMNFDIIKGRPIRIMWSQRDPSLRKSGV--GNVFIKNLDKTIDNK 611
            + F+   DA +A+  +N   +KG  ++ +   +D S    G     + I+NL       
Sbjct: 202 SLLFKSYKDARQAVAKLNGKTLKGVKVKAVIESKDKSSSPKGSKKSRLIIRNLAFNCTEA 261

Query: 612 AMYDTFSAFGNILSCKV 662
            + +TFSAFG +    V
Sbjct: 262 ILKETFSAFGEVSEASV 278



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 531 SQRD-PSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
           SQR  PS  K G+  VFI+NL      K + + F  FG+I  CKV
Sbjct: 404 SQRSKPSDVKEGL-TVFIRNLSFDSTQKNITNLFKQFGDIAYCKV 447


>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/71 (29%), Positives = 40/71 (56%)
 Frame = +3

Query: 312 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMN 491
           Y+G+L   + EA L ++FS    V+ ++V  D  T+R  G+A+V F    + E A++ ++
Sbjct: 233 YIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELD 291

Query: 492 FDIIKGRPIRI 524
                GR +++
Sbjct: 292 GQEFDGRSMKV 302



 Score = 36.7 bits (81), Expect = 0.017
 Identities = 17/64 (26%), Positives = 36/64 (56%)
 Frame = +3

Query: 381 VLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRIMWSQRDPSLRKS 560
           +LS++V  D  T R  G+ +V F    + ++A+D  + + + GRP+++  ++  P   + 
Sbjct: 35  LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKV--NKAQPRGERG 92

Query: 561 GVGN 572
           G G+
Sbjct: 93  GGGS 96


>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
          Length = 328

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/61 (32%), Positives = 36/61 (59%)
 Frame = +3

Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
           +  L+VG L  + T+  L E FS  G ++ + +  D +T R  G+A+V F+  ++A+ A+
Sbjct: 28  IGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEAD-AI 86

Query: 480 D 482
           D
Sbjct: 87  D 87



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 285 PPNYPMASLYVGDLHSDITEAMLFEKFSSA-GPVLSIRVCRDMITRRSLGYAYVNFQQPA 461
           PP+  +  ++VG L  + ++  + E F  A  PV  I    +  + R  G+ +V+F    
Sbjct: 97  PPHLRVKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGFCFVSFDSED 156

Query: 462 DAERALDSMNFDIIKGRPIRI 524
             ++  ++  F  I+G  + +
Sbjct: 157 TVDKICET-QFHNIEGNKVEV 176


>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 29/113 (25%), Positives = 52/113 (46%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
           L+VG+L  D  E  + E F   G V  + + ++       G+ ++       AE A   +
Sbjct: 55  LFVGNL-IDCDEEEMKEMFKKYGEVAEVFINKEK------GFGFIRLDTRLHAEAAKAGL 107

Query: 489 NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNI 647
           +    KGR +R+ ++    +LR        +KNLD  + N+ +   FS FG++
Sbjct: 108 DMATRKGRTLRVRFATHAAALR--------VKNLDNLVTNELLEQAFSQFGDV 152


>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
          Length = 419

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
 Frame = +3

Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
           +LY+ +L  +  EAML   FS  G V+S R+ RD  T  S G  +   +     E+ +  
Sbjct: 180 NLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDT-NSKGVGFARMESAEKCEQVIKD 238

Query: 486 MNFDIIKG--RPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDN 608
            N  ++ G  + + + ++   P  ++ G    + K ++  I N
Sbjct: 239 FNKKMLPGCIQELVVKFADGGPK-KRQGQAKRYTKQMEDHIVN 280


>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLG--YAYVNFQQPADAERALD 482
           +YVG+L  D+ E  L + F   G +  +    D+  RR  G  +A+V F+ P DAE A+ 
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADV----DLKNRRGAGPPFAFVEFEDPRDAEDAVK 318

Query: 483 SMNFDIIKGRPIRIMWSQRDPSLRKSGVG 569
             +     G  IR+ +  R  S R  G G
Sbjct: 319 GRDGHEFDGYRIRVEF-PRGGSGRGGGGG 346


>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
          Length = 2386

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 23/76 (30%), Positives = 40/76 (52%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
           +++G L  D+TE +L E F+  GPV  + + RD  + +S    +V+F     AE A   M
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDE-SGKSRQSGFVHFWSSDVAEAANVGM 584

Query: 489 NFDIIKGRPIRIMWSQ 536
           N   I G+ +   +++
Sbjct: 585 NGCDILGKIVETKYAK 600


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 23/77 (29%), Positives = 40/77 (51%)
 Frame = +3

Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
           ++++VG L   +T+  L   F   G + SI    D+I  R  G AY+  ++  DA RALD
Sbjct: 541 STIWVGHLAKIVTQDTLQGIFEEHGTITSI----DLIPPR--GCAYIQMEKREDAYRALD 594

Query: 483 SMNFDIIKGRPIRIMWS 533
            +    + G  +++ W+
Sbjct: 595 KLRNIKLYGNSVKLAWA 611


>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
           +++G +  D  E  L       G +   R+  D  T  + G+A+  F +   A +A+ ++
Sbjct: 155 VFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAITTL 214

Query: 489 N-FDIIKGRPIRIMWSQRDPSLRKSGV 566
           N  DI  GR + I  S+ +  L   G+
Sbjct: 215 NDKDIRPGRRLAICKSRSNSRLFVKGI 241


>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
          Length = 171

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 22/71 (30%), Positives = 37/71 (52%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
           +Y+G +     E  + + F   G V  IR+ R   + RS GYA+V F     A+ A D+M
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTM 159

Query: 489 NFDIIKGRPIR 521
           +  ++ GR ++
Sbjct: 160 HNYMMFGRLLK 170


>SB_76| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
 Frame = +3

Query: 312 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRS---LGYAYVNFQQPADAERALD 482
           +VG+L SD+ + ML +K  ++   L I VC   + RR+     +A+V+    +D E A+ 
Sbjct: 13  FVGNLRSDVPKTMLEDKLRASFESLGIFVCSVDVRRRNGKKPTHAFVDLASKSDLENAIT 72

Query: 483 SMN-FD---IIKGRPIRI 524
           + + FD   +  G+ IR+
Sbjct: 73  NADRFDQKLVFDGKIIRV 90


>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 420 RSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRI 524
           RS G+ +V F  P DA+ A+ S+N   ++GR ++I
Sbjct: 97  RSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131


>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
 Frame = +3

Query: 279 PGPPNYPMAS-LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQ 455
           PG  +  + S +++G +  D  E  L   F   G +   R+  D I+  + G+A+  F  
Sbjct: 143 PGTGSEKVCSQVFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSN 202

Query: 456 PADAERALDSM-NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFS 632
             +A+ A+  + N +I  G+ + +  S  +  L        F+ ++ KT   + + + FS
Sbjct: 203 KDEAQNAVKKLDNKEIRPGKRLGVCISVANSRL--------FVGSIPKTKSKQEILEEFS 254

Query: 633 AFGN 644
              N
Sbjct: 255 KVTN 258


>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
          Length = 201

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
           LYVG+L  +   + L   F   G     R+ +  + R   G+A+V ++   DAE A+  +
Sbjct: 6   LYVGNLGRNADSSELERAFEKFG-----RLSKVWVARNPPGFAFVEYEDYRDAEEAVREL 60

Query: 489 NFDIIKGRPIRIMWS 533
           +   +  R IR+ +S
Sbjct: 61  DGANVCDRTIRVEFS 75


>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 22/91 (24%), Positives = 45/91 (49%)
 Frame = +3

Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
           M  +Y+G L  + ++  +  +F   GP+  + V R+       G+A+  F    DAE A+
Sbjct: 31  MTKVYIGSLGDNASKREIENEFGYYGPLKDVWVARN-----PPGFAFCIFDDRRDAEDAV 85

Query: 480 DSMNFDIIKGRPIRIMWSQRDPSLRKSGVGN 572
             ++   I G+ +R+  + + PS  +  +G+
Sbjct: 86  RELDGRYICGQRVRVELA-KGPSRGRPRMGS 115


>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
          Length = 252

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 387 SIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRI 524
           ++ +  D  T R  G+ +V F    + E+A+D  +   + GRP+++
Sbjct: 124 AVNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKV 169


>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 429 GYAYVNFQQPADAERALDSMNFDIIKGRPIRIMWSQRDPS 548
           GY +V F++  DA +AL  +N  I+  R + + W+    S
Sbjct: 432 GYCFVEFKKKEDARKALRGLNKKIVLSRALVVDWAHHHKS 471


>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
          Length = 253

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 342 EAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPI 518
           E +  E     G +  + VC D +    +G  YV F+   DAE+A++ +N     G+PI
Sbjct: 85  EDVFLELEEKYGEIEEMNVC-DNLGDHLVGNVYVKFRYEEDAEKAVNDLNNRWYNGQPI 142


>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
          Length = 291

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
           L+VG +  +  +  L + F+  G +    V +D +T++S GY +V       AE A  + 
Sbjct: 12  LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNK 71

Query: 489 NFDIIKGRPIRI 524
              +I+GR   +
Sbjct: 72  R-PMIEGRQANV 82


>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/75 (22%), Positives = 39/75 (52%)
 Frame = +3

Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
           M+ +Y+G++  + ++  +  +F + GP+  +      + R   G+A+  F+   DAE A+
Sbjct: 1   MSRVYIGNIGDNASKREIEREFETFGPLRDV-----WVARNPPGFAFCVFEDRRDAEDAV 55

Query: 480 DSMNFDIIKGRPIRI 524
             ++   I G+  R+
Sbjct: 56  RELDGRYICGQRARV 70


>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
          Length = 248

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 312 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ 452
           Y+G+L   + E  L EKF     V+ +RV  D  T R  G+ +V  +
Sbjct: 85  YIGNLSYSVDEQALEEKFHDCN-VVDVRVITDRETGRPRGFGFVTLE 130


>SB_15485| Best HMM Match : DUF28 (HMM E-Value=9.6)
          Length = 341

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+  +Y+GDL S+I      E++SS GP
Sbjct: 252 DSGIFLHRPGEWKPPLG-VYLGDLTSEIGAGDFTERYSSTGP 292


>SB_46269| Best HMM Match : APG5 (HMM E-Value=8.2)
          Length = 220

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+  +Y+GDL S++      E++SS GP
Sbjct: 131 DSGIFLHRPGEWKPPLG-VYLGDLTSELEPGDFTERYSSTGP 171


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
           +++G L + + E  + E  SS G + +  + +D  T  S GYA+  +      + A+  +
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734

Query: 489 N 491
           N
Sbjct: 735 N 735


>SB_13874| Best HMM Match : YTV (HMM E-Value=5.2)
          Length = 356

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+ + Y+GDL S++      +++SS GP
Sbjct: 220 DSVIFLHRPGEWKPPLGN-YLGDLTSELEPGDFIDRYSSTGP 260


>SB_57035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+   Y+GDL S++      +++SS GP
Sbjct: 102 DSVIFLHRPGEWKPPLGD-YLGDLTSELEPGDFIDRYSSTGP 142


>SB_51719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1296

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 255  NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
            +S IF   PG    P+   Y+GDL S++      +++SS GP
Sbjct: 1172 DSVIFLHRPGAWKPPLGD-YLGDLTSELEPGDFIDRYSSTGP 1212


>SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 255  NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
            +S IF   PG    P+   Y+GDL S++      +++SS GP
Sbjct: 1226 DSVIFLNRPGEWKPPLGD-YLGDLTSELEPGDFIDRYSSTGP 1266


>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 396 VCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPI 518
           V  D  TRRS  + YV F+   DA  A+  M  +  KG+ I
Sbjct: 7   VVYDRETRRSRNFGYVTFRDEQDAADAMKQMGGESGKGKEI 47


>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+   Y+GDL S++      +++SS GP
Sbjct: 680 DSVIFLNGPGEWKPPLGD-YLGDLTSELEPGDFIDRYSSTGP 720


>SB_51729| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=1.2)
          Length = 519

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 264 IFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           IF   PG    P+   Y+GDL S++      E++SS GP
Sbjct: 388 IFLHRPGEWKPPLGD-YLGDLTSELEPGDFIERYSSTGP 425


>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 420

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +3

Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
           S++VG L S   E  L + F   G V S+R+ R  +   S  Y +V F+    ++  L  
Sbjct: 81  SVFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFL-GYSRNYGFVLFKDDGPSKEVLKK 139

Query: 486 MNFDIIKGRPIRI 524
            +  +I G+ + +
Sbjct: 140 SH--VINGKTVDV 150


>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1388

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 255  NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
            +S IF  +PG    P+   Y+GDL S++ E    + +SS GP
Sbjct: 1254 DSVIFLHSPGEWMPPLGD-YLGDLTSELDEGDFIDCYSSTGP 1294


>SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+   Y+GDL S++      +++SS GP
Sbjct: 793 DSVIFLHRPGEWKPPLGD-YLGDLTSELEPGDFIDRYSSTGP 833


>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+   Y+GDL S++ E    + +SS GP
Sbjct: 290 DSVIFLHRPGEWMPPLGD-YLGDLTSELDEGDFIDCYSSTGP 330


>SB_47978| Best HMM Match : W2 (HMM E-Value=4.7)
          Length = 195

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+   Y+GDL S++ E    + +SS GP
Sbjct: 14  DSVIFLHRPGEWMPPLGD-YLGDLTSELDEGDFIDCYSSTGP 54


>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1575

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 255  NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
            +S IF   PG    P+   Y+GDL S++ E    + +SS GP
Sbjct: 1168 DSVIFLHRPGEWMPPLGD-YLGDLTSELDEGDFIDCYSSTGP 1208


>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1725

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+   Y+GDL S++ E    + +SS GP
Sbjct: 209 DSVIFLHRPGEWMPPLGD-YLGDLTSELDEGDFIDCYSSTGP 249


>SB_30663| Best HMM Match : rve (HMM E-Value=3.3e-25)
          Length = 346

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+   Y+GDL S++ E    + +SS GP
Sbjct: 24  DSVIFLHRPGEWMPPLGD-YLGDLTSELDEGDFIDCYSSTGP 64


>SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)
          Length = 889

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+   Y+GDL S++ E    + +SS GP
Sbjct: 140 DSVIFLHRPGEWMPPLGD-YLGDLTSELDEGDFIDCYSSTGP 180


>SB_48236| Best HMM Match : DNA_pol_B_2 (HMM E-Value=8.6e-09)
          Length = 1396

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 255  NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
            +S IF   PG    P+   Y+GDL S++      +++SS GP
Sbjct: 1260 DSIIFLHRPGAWKPPLGD-YLGDLTSELEPGDFIDRYSSTGP 1300


>SB_40318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+   Y+GDL S++      +++SS GP
Sbjct: 18  DSVIFFNRPGEWKPPLGD-YLGDLTSELEPGDFIDRYSSTGP 58


>SB_38075| Best HMM Match : ELK (HMM E-Value=8.7)
          Length = 321

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+   Y+GDL S++ E    + +SS GP
Sbjct: 209 DSVIFLHRPGEWMPPLGD-YLGDLTSELDEGDFIDCYSSTGP 249


>SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)
          Length = 1378

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 255  NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
            +S IF   PG    P+   Y+GDL S++ E    + +SS GP
Sbjct: 1244 DSVIFLHRPGEWMPPLGD-YLGDLTSELDEGDFIDCYSSTGP 1284


>SB_37544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+ + Y+GDL S++      +++SS GP
Sbjct: 720 DSVIFLHLPGEWKPPLGN-YLGDLTSELEPGDFIDRYSSTGP 760


>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
          Length = 1336

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 255  NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
            +S IF   PG    P+   ++G+L S++ E    + F+S GP
Sbjct: 1202 DSVIFTQRPGEWEPPLGD-HLGELTSELAEGDFIDHFASTGP 1242


>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/72 (29%), Positives = 39/72 (54%)
 Frame = +3

Query: 336 ITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRP 515
           +TE +L E+F+  G V  +   ++    RS G+  V F     A++A+D MN   ++   
Sbjct: 119 LTEEILKEEFNHLGHVERVNFEKN----RSQGF--VTFDTWEAADKAIDEMNGLKVQHVH 172

Query: 516 IRIMWSQRDPSL 551
           IR+  ++R P++
Sbjct: 173 IRVSMARRQPNM 184


>SB_40242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 264 IFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           IF   PG    P+   Y+GDL S++      +++SS GP
Sbjct: 3   IFLHRPGEWKPPLGD-YLGDLTSELEPGDFIDRYSSTGP 40


>SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1)
          Length = 1118

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF   PG    P+   Y+GDL S++ +    + +SS GP
Sbjct: 442 DSVIFLQRPGEWVPPLGD-YLGDLTSELEQGDFIDCYSSTGP 482


>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
          Length = 2232

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 255  NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
            +S IF   PG    P+   ++GDL S++ E    + F+S GP
Sbjct: 1168 DSVIFVHRPGEWEPPLGD-HLGDLTSELEEGDYIDHFASTGP 1208


>SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1099

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 255  NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
            +S IF   PG    P+   Y+GDL S++        +SS GP
Sbjct: 966  DSVIFLQRPGEWKPPLGD-YLGDLTSELEPGYFINCYSSTGP 1006


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 429 GYAYVNFQQPADAERALDSMNFDIIKGRPI 518
           GYAYV F++  DA+RA+ ++N     G  I
Sbjct: 37  GYAYVVFKENKDADRAVAALNNSEFHGAKI 66


>SB_42814| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.4e-09)
          Length = 924

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
           +S IF  +PG    P+   Y+GDL S++      +++S +GP
Sbjct: 869 DSVIFLHHPGAWKPPLGD-YLGDLTSELEPGDFIDRYSYSGP 909


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 255  NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGP 380
            +S IF   PG    P+   Y+GDL S++ +      +SS GP
Sbjct: 1099 DSVIFLQRPGEWMPPLGD-YLGDLTSELGQGDFINCYSSTGP 1139


>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
          Length = 462

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 540 DPSLRKSG---VGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
           +P ++KS       VF+ NLD  ++ + + DTF   G+++  ++
Sbjct: 173 NPMMKKSNDPAASTVFVTNLDYKVNWQKLKDTFKCAGHVIRAEI 216


>SB_38124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 CNSKIFKMNPGPPNYPMASLYVGDLHS 332
           C   IFKM P PP+YP + ++    H+
Sbjct: 101 CQPPIFKM-PSPPDYPSSRVFKAQQHT 126


>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 309 LYVGDLHSDITEAMLFEKFSSAGPV--LSIRVCRDMITRRSLGYAYVNF 449
           L++G L  + +E  +    +   P   L I++ RD  T +  GY +VNF
Sbjct: 106 LFIGGLKDEHSEEDVKTALAPLSPFAPLEIKMVRDRETNKFKGYCFVNF 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,856,391
Number of Sequences: 59808
Number of extensions: 312403
Number of successful extensions: 796
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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