Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M05
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.9  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 292 ITRWRLYMSEIYTRTSQRPCC 354
           +TR R ++  ++TR S+ P C
Sbjct: 15  LTRLRRHIQNVHTRPSKEPIC 35


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 534  QRDPSLRKSGVGNVFIKNLDKT 599
            Q    LR+   G++FIK +D+T
Sbjct: 1318 QSSDRLRQLPEGSLFIKEVDRT 1339


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 258 SKIFKMNPGPPNYPMASL 311
           +KIF   PG  N+ MA+L
Sbjct: 298 AKIFPPTPGSFNFSMAAL 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,621
Number of Sequences: 438
Number of extensions: 3167
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)