Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M05
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 178 2e-45
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 163 9e-41
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 158 4e-39
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 143 1e-34
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 131 5e-31
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 122 2e-28
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 93 1e-19
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 88 4e-18
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 65 5e-11
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 64 8e-11
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 64 1e-10
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 60 2e-09
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 60 2e-09
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 58 7e-09
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 57 9e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 57 1e-08
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 56 3e-08
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 55 4e-08
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 54 6e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 54 6e-08
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 54 6e-08
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 53 1e-07
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 52 3e-07
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 52 5e-07
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 51 6e-07
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 51 6e-07
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 51 6e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 51 8e-07
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 51 8e-07
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 51 8e-07
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 50 1e-06
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 50 2e-06
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 50 2e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 50 2e-06
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 49 3e-06
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 48 4e-06
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 48 7e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 48 7e-06
At5g51300.2 68418.m06360 splicing factor-related contains simila... 47 1e-05
At5g51300.1 68418.m06359 splicing factor-related contains simila... 47 1e-05
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 47 1e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 46 2e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 46 2e-05
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 46 2e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 46 3e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 46 3e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 46 3e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 46 3e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 45 4e-05
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 44 7e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 44 7e-05
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 44 7e-05
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 44 7e-05
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 44 9e-05
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 44 1e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 43 2e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 43 2e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 43 2e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 42 4e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 42 4e-04
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 42 4e-04
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 42 4e-04
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 42 5e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 41 6e-04
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 41 6e-04
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 41 6e-04
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 41 6e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 41 6e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 41 8e-04
At5g24440.1 68418.m02880 RNA-binding protein, putative 40 0.001
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 40 0.001
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 40 0.001
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 40 0.002
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 40 0.002
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 40 0.002
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 39 0.003
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 39 0.003
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.003
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 39 0.003
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 38 0.005
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 38 0.006
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 38 0.006
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 38 0.008
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 38 0.008
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 38 0.008
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 37 0.010
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 37 0.014
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 37 0.014
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 37 0.014
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 36 0.018
At4g10610.1 68417.m01735 RNA-binding protein, putative 36 0.018
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 36 0.018
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 36 0.018
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.024
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.024
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 36 0.032
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 35 0.042
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 35 0.042
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 35 0.042
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.056
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 33 0.17
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 33 0.17
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 33 0.17
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.22
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.22
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 32 0.30
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 32 0.30
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 32 0.39
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 32 0.39
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 32 0.39
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 32 0.39
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 32 0.39
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 32 0.39
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 32 0.39
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.52
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 31 0.52
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 31 0.52
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 31 0.68
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 31 0.68
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 31 0.68
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 31 0.68
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 31 0.68
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 31 0.68
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 31 0.90
At3g10570.1 68416.m01268 cytochrome P450, putative similar to cy... 30 1.2
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 30 1.2
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 30 1.6
At5g50330.1 68418.m06233 ABC1 family protein contains Pfam domai... 29 2.1
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 29 2.1
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 4.8
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 28 6.4
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 28 6.4
At3g26290.1 68416.m03280 cytochrome P450 71B26, putative (CYP71B... 28 6.4
At3g20950.1 68416.m02648 cytochrome P450 family protein similar ... 28 6.4
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 6.4
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 178 bits (434), Expect = 2e-45
Identities = 81/119 (68%), Positives = 100/119 (84%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
SLYVGDL + +T++ LFE F+ AG V+S+RVCRDM TRRSLGY YVN+ P DA RAL+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 486 MNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
+NF + GR IR+M+S RDPSLRKSGVGN+FIKNLDK+ID+KA+++TFSAFG ILSCKV
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164
Score = 65.3 bits (152), Expect = 3e-11
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
+ ++++ +L I L E FS+ GP+LS +V D + +S GY +V + A+ A+
Sbjct: 132 VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAI 190
Query: 480 DSMNFDIIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNI 647
D +N ++ + + + QRDPS K NV++KNL +++ ++ + F FG
Sbjct: 191 DKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVT 250
Query: 648 LSCKV 662
SC +
Sbjct: 251 TSCVI 255
Score = 55.2 bits (127), Expect = 4e-08
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Frame = +3
Query: 276 NPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQ 455
+P ++YV +L +++ L + F G S + RD +S G+ +VNF+
Sbjct: 215 DPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFEN 273
Query: 456 PADAERALDSMNFDIIKGRPIRI----MWSQRDPSLR------------KSGVGNVFIKN 587
DA RA+D++N + + S+R+ L+ KS N+++KN
Sbjct: 274 SDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKN 333
Query: 588 LDKTIDNKAMYDTFSAFGNILSCKV 662
LD+++ + + + F+ FG I SCKV
Sbjct: 334 LDESVTDDKLREHFAPFGTITSCKV 358
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 163 bits (396), Expect = 9e-41
Identities = 77/123 (62%), Positives = 95/123 (77%)
Frame = +3
Query: 294 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
+P +SLYVGDL + E+ L + F+ PV ++RVCRD+ T RSLGYAYVNF P DA R
Sbjct: 42 HPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASR 100
Query: 474 ALDSMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILS 653
A++S+N+ I+ RPIRIM S RDPS R SG GNVFIKNLD +IDNKA+Y+TFS+FG ILS
Sbjct: 101 AMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILS 160
Query: 654 CKV 662
CKV
Sbjct: 161 CKV 163
Score = 65.7 bits (153), Expect = 3e-11
Identities = 38/125 (30%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++++ +L + I L+E FSS G +LS +V D++ RS GY +V F++ A+ A+D
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVV-GRSKGYGFVQFEKEETAQAAIDK 191
Query: 486 MNFDIIKGRPIRI--MWSQRDPSLRKSGV----GNVFIKNLDKTIDNKAMYDTFSAFGNI 647
+N ++ + + + ++D + +SG NV++KNL K I + + TF +G+I
Sbjct: 192 LNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI 251
Query: 648 LSCKV 662
S V
Sbjct: 252 SSAVV 256
Score = 52.8 bits (121), Expect = 2e-07
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 17/136 (12%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++YV +L +IT+ L + F G + S V +D + S + +VNF P A A++
Sbjct: 226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 486 MNFDIIKGRPIRIMW-----SQRDPSLR------------KSGVGNVFIKNLDKTIDNKA 614
MN I G + + S R+ LR K N+++KNLD +++++
Sbjct: 285 MN-GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 343
Query: 615 MYDTFSAFGNILSCKV 662
+ + FS +GN+ SCKV
Sbjct: 344 LKEMFSEYGNVTSCKV 359
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 158 bits (383), Expect = 4e-39
Identities = 74/123 (60%), Positives = 93/123 (75%)
Frame = +3
Query: 294 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
+P +SLY GDL +TEA LF+ F V+S+RVCRD RRSLGYAY+NF P DA R
Sbjct: 46 HPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYR 104
Query: 474 ALDSMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILS 653
A++++N+ + RPIRIM S RDPS R SG GN+FIKNLD +IDNKA+++TFS+FG ILS
Sbjct: 105 AMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILS 164
Query: 654 CKV 662
CKV
Sbjct: 165 CKV 167
Score = 68.9 bits (161), Expect = 3e-12
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++++ +L + I LFE FSS G +LS +V D +T RS GY +V F++ A+ A+D
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195
Query: 486 MN------FDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNI 647
+N + G IR RD + NV++KNL K I + TF FG I
Sbjct: 196 LNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI 255
Query: 648 LSCKV 662
S V
Sbjct: 256 SSAVV 260
Score = 50.0 bits (114), Expect = 1e-06
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Frame = +3
Query: 288 PNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 467
P ++YV +L +I E L + F G + S V RD + S + +VNF+ A
Sbjct: 224 PTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAA 282
Query: 468 ERALDSMNFDIIKGRPIRIMW-----SQRDPSLR------------KSGVGNVFIKNLDK 596
A++ MN I G + + S+R+ LR KS N+++KNLD
Sbjct: 283 ASAVEKMN-GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDD 341
Query: 597 TIDNKAMYDTFSAFGNILSCKV 662
++D++ + + FS +GN+ S KV
Sbjct: 342 SVDDEKLKEMFSEYGNVTSSKV 363
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 143 bits (346), Expect = 1e-34
Identities = 61/121 (50%), Positives = 88/121 (72%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
+ SLYVGDL ++T++ L++ F+ V+S+RVCRD T SLGY YVN+ DAE+A+
Sbjct: 45 LCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAM 104
Query: 480 DSMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCK 659
+N+ + G+ IRI +S RD S R+SGVGN+F+KNLDK++DNK +++ FS G I+SCK
Sbjct: 105 QKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCK 164
Query: 660 V 662
V
Sbjct: 165 V 165
Score = 57.2 bits (132), Expect = 9e-09
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
+ +L+V +L + L E FS G ++S +V D + + S GY +V F A+ A+
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQ-SRGYGFVQFDTEDSAKNAI 191
Query: 480 DSMNFDIIKGRPIRI----MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNI 647
+ +N ++ + I + +R+ + K NV++KNL + + + TF +G+I
Sbjct: 192 EKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSI 251
Query: 648 LSCKV 662
S V
Sbjct: 252 SSAVV 256
Score = 50.8 bits (116), Expect = 8e-07
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++YV +L T+ L F G + S V RD +S + +VNF+ P DA RA+++
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEA 284
Query: 486 MNFDIIKGRPIRI----MWSQRDPSLRK-----SGVG-------NVFIKNLDKTIDNKAM 617
+N + + S+R+ L + S G N+++KNLD T+ ++ +
Sbjct: 285 LNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKL 344
Query: 618 YDTFSAFGNILSCKV 662
+ F+ FG I SCKV
Sbjct: 345 RELFAEFGTITSCKV 359
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 131 bits (316), Expect = 5e-31
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
ASLYVGDLH +TE +L++ F+ + S+R+C+D + RSL Y Y NF DA A++
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 483 SMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
N ++ G+ IR+MWS R P R++GVGNVF+KNL +++ N + D F FGNI+SCKV
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKV 143
Score = 61.3 bits (142), Expect = 6e-10
Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 16/141 (11%)
Frame = +3
Query: 288 PNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 467
P +LY+ +L +D++E +L EKF+ G ++S+ + +D R GYA+VNF P DA
Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDA 254
Query: 468 ERALDSMNFDIIKGRPIRIMWSQ----RDPSLRK------------SGVGNVFIKNLDKT 599
RA +++N + + + +Q R+ LR+ + V N+++KN++
Sbjct: 255 RRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVA 314
Query: 600 IDNKAMYDTFSAFGNILSCKV 662
+ + + FS G I S K+
Sbjct: 315 VTEEELRKHFSQCGTITSTKL 335
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
+ +++V +L +T A+L + F G ++S +V + +S GY +V F+Q A A+
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 480 DSMNFDIIKGRPIRI--MWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILS 653
++N I+ + I + + D + N+++KNLD + + + F+ FG I+S
Sbjct: 170 QTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVS 229
Query: 654 CKV 662
+
Sbjct: 230 LAI 232
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/80 (25%), Positives = 45/80 (56%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
++++YV +++ +TE L + FS G + S ++ D +S G+ +V F P +A A+
Sbjct: 303 VSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAV 361
Query: 480 DSMNFDIIKGRPIRIMWSQR 539
+ + + G+P+ + +Q+
Sbjct: 362 KTFHGQMFHGKPLYVAIAQK 381
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 122 bits (295), Expect = 2e-28
Identities = 57/122 (46%), Positives = 82/122 (67%), Gaps = 3/122 (2%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
SLYVGDL D+TE L +KFS PV+S+ +CR+ +T +S+ YAY+NF P A A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 486 MNFDIIKGRPIRIMWSQRDPSLR---KSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSC 656
+N +KG+ +RIMWSQRD + R ++G N+++KNLD +I + + F FG+ILSC
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 657 KV 662
KV
Sbjct: 142 KV 143
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
A+LYV +L S IT + L F G +LS +V + +S G+ +V F A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARS 169
Query: 483 SMNFDIIKGRPIRIM-WSQRDPSLRKSG---VGNVFIKNLDKTIDNKAMYDTFSAFGNIL 650
+++ ++ G+ + + + +D +G NV++KNL +T+ + ++ FS +G +
Sbjct: 170 ALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVS 229
Query: 651 SCKV 662
S V
Sbjct: 230 SVVV 233
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +3
Query: 288 PNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRV-CRDMITRRSLGYAYVNFQQPAD 464
PN ++LYV +L + E L E F G ++S +V C + RS G+ +V F +
Sbjct: 299 PNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE--NGRSKGFGFVCFSNCEE 356
Query: 465 AERALDSMNFDIIKGRPIRIMWSQR 539
+++A +N ++ G+PI + ++R
Sbjct: 357 SKQAKRYLNGFLVDGKPIVVRVAER 381
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/117 (38%), Positives = 72/117 (61%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
A++YVG L + ++E +L+E F AGPV+++ V +D +T Y ++ ++ DA+ A+
Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
Query: 483 SMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILS 653
+N + G+PIR+ + +D G N+FI NLD +D K +YDTFSAFG I S
Sbjct: 85 VLNMIKLHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIAS 140
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 88.2 bits (209), Expect = 4e-18
Identities = 38/62 (61%), Positives = 52/62 (83%)
Frame = +3
Query: 477 LDSMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSC 656
++ +N+ +KG+P+RIM+S+RDPS R SG GNVF+KNLD++IDNK + D FSAFG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 657 KV 662
KV
Sbjct: 61 KV 62
Score = 52.8 bits (121), Expect = 2e-07
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 17/136 (12%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++YV +L T+A L F G + S V +D +S + +VNF++ A A++
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDG-EGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 486 MNFDIIKGRPIRIMWSQRDPS--------------LR--KSGVG-NVFIKNLDKTIDNKA 614
MN ++ + + + +QR + +R K+ G N+++KNLD ++DN
Sbjct: 179 MNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTK 238
Query: 615 MYDTFSAFGNILSCKV 662
+ + FS FG I SCKV
Sbjct: 239 LEELFSEFGTITSCKV 254
Score = 49.6 bits (113), Expect = 2e-06
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
+++V +L I L + FS+ G VLS +V RD + S GY +V F A +
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNF 90
Query: 486 MNFDIIKGRPIRIMWSQRDPSLRKSGV-GNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
N +I+ + I + KS V NV++KNL +T + + F FG I S V
Sbjct: 91 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 64.9 bits (151), Expect = 5e-11
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Frame = +3
Query: 279 PGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 458
PG S+Y G++H+ +TE +L E F+S GP+ S C+ +I + Y +V++
Sbjct: 55 PGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIES---CK-LIRKDKSSYGFVHYFDR 110
Query: 459 ADAERALDSMNFDIIKGRPIRIMWSQRDPSLR-KSGVGNVFIKNLDKTIDNKAMYDTFSA 635
A A+ ++N I G+P+++ W+ S N+F+ +L + + A++D+FSA
Sbjct: 111 RCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSA 170
Query: 636 FGNILSCKV 662
F + +V
Sbjct: 171 FNSCSDARV 179
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/78 (35%), Positives = 46/78 (58%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
+++VGDL ++T+A LF+ FS+ RV D T RS G+ +V+F+ DA+ A++
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 486 MNFDIIKGRPIRIMWSQR 539
MN + R IR W+ +
Sbjct: 209 MNGKWVSSRQIRCNWATK 226
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 64.1 bits (149), Expect = 8e-11
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 279 PGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 458
PG S+Y G++H+ +TE +L E F+S GP+ S C+ +I + Y +V++
Sbjct: 55 PGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIES---CK-LIRKDKSSYGFVHYFDR 110
Query: 459 ADAERALDSMNFDIIKGRPIRIMWSQRDPSLR-KSGVGNVFIKNLDKTIDNKAMYDTFSA 635
A A+ ++N I G+P+++ W+ S N+F+ +L + + A++D+FSA
Sbjct: 111 RCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSA 170
Query: 636 FGNILS 653
F + S
Sbjct: 171 FNSCSS 176
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 63.7 bits (148), Expect = 1e-10
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Frame = +3
Query: 279 PGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 458
PG S+YVG++H+ +TE +L E F+S GPV S + +I + Y +V++
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSK----LIRKDKSSYGFVHYFDR 106
Query: 459 ADAERALDSMNFDIIKGRPIRIMWSQRDPSLR-KSGVGNVFIKNLDKTIDNKAMYDTFSA 635
A A+ S+N + G+PI++ W+ S N+F+ +L + + +Y +FS
Sbjct: 107 RSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSV 166
Query: 636 FGNILSCKV 662
F + +V
Sbjct: 167 FSSCSDARV 175
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 59.7 bits (138), Expect = 2e-09
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 19/141 (13%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
P +++VGDL +D+T+ +L E F ++ P V +V D +T R+ GY +V F ++ R
Sbjct: 153 PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIR 212
Query: 474 ALDSMNFDIIKGRPIRI--------MWSQRDPSLRKSGVG----------NVFIKNLDKT 599
A+ MN RP+RI + QRD S + S G VF+ LD +
Sbjct: 213 AMTEMNGVPCSTRPMRIGPAASKKGVTGQRD-SYQSSAAGVTTDNDPNNTTVFVGGLDAS 271
Query: 600 IDNKAMYDTFSAFGNILSCKV 662
+ + + + FS +G I+ K+
Sbjct: 272 VTDDHLKNVFSQYGEIVHVKI 292
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
+L++GDL + E L+ F+ G ++S +V R+ T + GY ++ F A AER L +
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 486 MNFDIIKGRP---IRIMWSQRDPSLRK--SGVGNVFIKNLDKTIDNKAMYDTFSA-FGNI 647
N I P R+ W+ ++ S +F+ +L + + + +TF A + ++
Sbjct: 123 FNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSV 182
Query: 648 LSCKV 662
KV
Sbjct: 183 KGAKV 187
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 59.7 bits (138), Expect = 2e-09
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 19/141 (13%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
P +++VGDL +D+T+ +L E F ++ P V +V D +T R+ GY +V F ++ R
Sbjct: 153 PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIR 212
Query: 474 ALDSMNFDIIKGRPIRI--------MWSQRDPSLRKSGVG----------NVFIKNLDKT 599
A+ MN RP+RI + QRD S + S G VF+ LD +
Sbjct: 213 AMTEMNGVPCSTRPMRIGPAASKKGVTGQRD-SYQSSAAGVTTDNDPNNTTVFVGGLDAS 271
Query: 600 IDNKAMYDTFSAFGNILSCKV 662
+ + + + FS +G I+ K+
Sbjct: 272 VTDDHLKNVFSQYGEIVHVKI 292
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
+L++GDL + E L+ F+ G ++S +V R+ T + GY ++ F A AER L +
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 486 MNFDIIKGRP---IRIMWSQRDPSLRK--SGVGNVFIKNLDKTIDNKAMYDTFSA-FGNI 647
N I P R+ W+ ++ S +F+ +L + + + +TF A + ++
Sbjct: 123 FNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSV 182
Query: 648 LSCKV 662
KV
Sbjct: 183 KGAKV 187
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 57.6 bits (133), Expect = 7e-09
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
+L+VGDL + E L FS G V S++V R+ +T +S GY +V F A AE L +
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 486 MNFDII--KGRPIRIMWSQRDPSLRKSGVGN-----VFIKNLDKTIDNKAMYDTFS-AFG 641
+ ++ +P RI W+ K V N VF+ +L + + +++TFS +
Sbjct: 169 YSGSVMPNSDQPFRINWASFSTG-EKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYP 227
Query: 642 NILSCKV 662
++ S KV
Sbjct: 228 SVKSAKV 234
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +3
Query: 291 NYPMASLYVGDLHSDITEAMLFEKFSSAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADA 467
N P S++VGDL D+T+ +L E FS P V S +V D T RS GY +V F +
Sbjct: 198 NGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENER 257
Query: 468 ERALDSMNFDIIKGRPIRI 524
RAL MN R +R+
Sbjct: 258 SRALTEMNGAYCSNRQMRV 276
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/87 (27%), Positives = 44/87 (50%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
A+++VG + D+ + L + FS G V+S+++ G +V F AE A++
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI------PVGKGCGFVQFADRKSAEDAIE 374
Query: 483 SMNFDIIKGRPIRIMWSQRDPSLRKSG 563
S+N +I +R+ W R P+ + G
Sbjct: 375 SLNGTVIGKNTVRLSWG-RSPNKQWRG 400
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 57.2 bits (132), Expect = 9e-09
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = +3
Query: 279 PGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 458
PG S+YVG++H +TE +L E F+ GPV S C+ +I + Y +V++
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVES---CK-LIRKEKSSYGFVHYFDR 101
Query: 459 ADAERALDSMNFDIIKGRPIRIMWSQRDPSLR-KSGVGNVFIKNLDKTIDNKAMYDTFSA 635
A A+ S+N + G+PI++ W+ S N+F+ +L + + ++ FS
Sbjct: 102 RSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSV 161
Query: 636 FGNILSCKV 662
+ +V
Sbjct: 162 YPTCSDARV 170
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
+++VGDL ++T+AMLF FS RV D T RS G+ +V+F+ DA+ A+D
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 486 MNFDIIKGRPIRIMWSQR 539
+ + R IR W+ +
Sbjct: 200 ITGKWLGSRQIRCNWATK 217
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/79 (35%), Positives = 46/79 (58%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P + L++G L + E L + FSS G V +R+ D + RS G+ +V+F + DA A
Sbjct: 39 PSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSA 98
Query: 477 LDSMNFDIIKGRPIRIMWS 533
D+M+ + GRP+RI ++
Sbjct: 99 KDAMDGKGLLGRPLRISFA 117
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/86 (33%), Positives = 48/86 (55%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
++SL+V ++E L + FS G V ++++ + TR+SLGY YV F DA+ A+
Sbjct: 76 ISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAV 135
Query: 480 DSMNFDIIKGRPIRIMWSQRDPSLRK 557
++MN GR I + + Q S R+
Sbjct: 136 EAMNGKFFDGRFILVKFGQPGLSRRR 161
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +3
Query: 537 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
R+ S S + ++F+K ++ + FS FG + + K+
Sbjct: 67 REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKI 108
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 55.2 bits (127), Expect = 4e-08
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Frame = +3
Query: 291 NYPMASLYVGDLHSDITEAMLFEKFSSAGP-VLSIRVCRDMITRRSLGYAYVNFQQPADA 467
N P S++VGDL D+++A+L E FS P V + +V D T RS GY +V F +
Sbjct: 195 NGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENER 254
Query: 468 ERALDSMNFDIIKGRPIRIMWS--------QRDPSLRKSGV----------GNVFIKNLD 593
+A+ MN R +RI + Q+ SG +F+ LD
Sbjct: 255 TKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLD 314
Query: 594 KTIDNKAMYDTFSAFGNILSCKV 662
++ ++ + FS FG I+S K+
Sbjct: 315 SSVTDEDLKQPFSEFGEIVSVKI 337
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 54.4 bits (125), Expect = 6e-08
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Frame = +3
Query: 264 IFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYV 443
I NPG + + SL++GDL + E + F+ +G S +V R+ +T +S GY ++
Sbjct: 48 IGSQNPGSAS-DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFI 106
Query: 444 NFQQPADAERALDSMNFDIIKG--RPIRIMWSQR---DPSLRKSGVGN-VFIKNLDKTID 605
F + AER L + N + + R+ W+Q + + G + +F+ +L +
Sbjct: 107 EFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVT 166
Query: 606 NKAMYDTF-SAFGNILSCKV 662
+ + DTF + +G++ KV
Sbjct: 167 DYMLSDTFKNVYGSVKGAKV 186
Score = 52.4 bits (120), Expect = 3e-07
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSA-GPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
P +++VGDL ++T+ ML + F + G V +V D T RS GY +V F + R
Sbjct: 152 PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMR 211
Query: 474 ALDSMNFDIIKGRPIRIMWSQR------DPSLRKSGVG-----------NVFIKNLDKTI 602
A+ MN RP+RI + P++ ++ G +F+ LD +
Sbjct: 212 AMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANV 271
Query: 603 DNKAMYDTFSAFGNILSCKV 662
+ + F FG +L K+
Sbjct: 272 TDDELKSIFGQFGELLHVKI 291
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 54.4 bits (125), Expect = 6e-08
Identities = 29/88 (32%), Positives = 43/88 (48%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P L+VG+L ++ A L + F SAG V + V D +T RS G+ +V A+ E A
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 477 LDSMNFDIIKGRPIRIMWSQRDPSLRKS 560
N +GRP+R+ P +S
Sbjct: 157 AQQFNGYEFEGRPLRVNAGPPPPKREES 184
Score = 47.6 bits (108), Expect = 7e-06
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
LYVG+L + + L F+ G V+ RV D + RS G+ +V + ++A++S+
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 489 NFDIIKGRPIRIMWSQRDP 545
N + GR IR+ ++ P
Sbjct: 311 NGADLDGRQIRVSEAEARP 329
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 54.4 bits (125), Expect = 6e-08
Identities = 29/88 (32%), Positives = 43/88 (48%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P L+VG+L ++ A L + F SAG V + V D +T RS G+ +V A+ E A
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 477 LDSMNFDIIKGRPIRIMWSQRDPSLRKS 560
N +GRP+R+ P +S
Sbjct: 157 AQQFNGYEFEGRPLRVNAGPPPPKREES 184
Score = 47.6 bits (108), Expect = 7e-06
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
LYVG+L + + L F+ G V+ RV D + RS G+ +V + ++A++S+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 489 NFDIIKGRPIRIMWSQRDP 545
N + GR IR+ ++ P
Sbjct: 319 NGADLDGRQIRVSEAEARP 337
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 53.2 bits (122), Expect = 1e-07
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSA-GPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
P +++VGDL D+T+ ML E F + V +V D T RS GY +V F ++ R
Sbjct: 171 PEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIR 230
Query: 474 ALDSMNFDIIKGRPIR 521
A+ MN RP+R
Sbjct: 231 AMTEMNGQYCSSRPMR 246
Score = 50.0 bits (114), Expect = 1e-06
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Frame = +3
Query: 276 NPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQ 455
NPG + SL++GDL + E L F G + +V R+ S GY ++ F
Sbjct: 72 NPGSAG-EIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVN 130
Query: 456 PADAERALDSMNFDIIKG--RPIRIMWSQRDPSLRKSGVG---NVFIKNLDKTIDNKAMY 620
A AER L + N + + R+ W+Q R+ G VF+ +L + + +
Sbjct: 131 HATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLT 190
Query: 621 DTFSA-FGNILSCKV 662
+TF A + ++ KV
Sbjct: 191 ETFKAVYSSVKGAKV 205
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/95 (25%), Positives = 46/95 (48%)
Frame = +3
Query: 276 NPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQ 455
N G + +++VG + +TE L F G ++ +++ +R +V +
Sbjct: 269 NSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---PAGKRC---GFVQYAN 322
Query: 456 PADAERALDSMNFDIIKGRPIRIMWSQRDPSLRKS 560
A AE+AL +N + G+ IR+ W R PS +++
Sbjct: 323 RACAEQALSVLNGTQLGGQSIRLSWG-RSPSNKQT 356
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 52.0 bits (119), Expect = 3e-07
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 16/135 (11%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++YV +L T+ L F G + S V +D +S G+ +VNF+ DA RA++S
Sbjct: 30 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVES 88
Query: 486 MN---FDIIK---GRP---------IRIMWSQR-DPSLRKSGVGNVFIKNLDKTIDNKAM 617
+N FD + GR +R+ + Q + K N+++KNLD +I ++ +
Sbjct: 89 LNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 148
Query: 618 YDTFSAFGNILSCKV 662
+ FS FG + S KV
Sbjct: 149 KEIFSPFGTVTSSKV 163
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 534 QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
+RD + K+ NV++KNL ++ + + + F +G I S V
Sbjct: 18 ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 60
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
L+VG+L ++ A L + F SAG V + V D IT RS G+ +V ++ E A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 489 NFDIIKGRPIRI 524
N + GRP+R+
Sbjct: 153 NGYELDGRPLRV 164
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 51.2 bits (117), Expect = 6e-07
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
+L++GDL + E L FS G ++S++V R+ IT + GY ++ F A AER L +
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 486 MNFDIIKGRPI--RIMWSQRDPSLRKSGVG---NVFIKNLDKTIDNKAMYDTFSA-FGNI 647
N + G + R+ W+ S +K G ++F+ +L + + + +TF + ++
Sbjct: 85 YNGTQMPGTELTFRLNWASFG-SGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSV 143
Query: 648 LSCKV 662
KV
Sbjct: 144 RGAKV 148
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFS-SAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
P S++VGDL D+T+ +L E F V +V D T RS GY +V F + ++ R
Sbjct: 114 PDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNR 173
Query: 474 ALDSMNFDIIKGRPIRI 524
A+ MN RP+RI
Sbjct: 174 AMAEMNGLYCSTRPMRI 190
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +3
Query: 279 PGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 458
P + ++ V +L ++TE L + FS G V+ +++ + GY YV F+
Sbjct: 229 PPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKI------PATKGYGYVQFKTR 282
Query: 459 ADAERALDSMNFDIIKGRPIRIMWSQ 536
AE A+ M +I + +RI WS+
Sbjct: 283 PSAEEAVQRMQGQVIGQQAVRISWSK 308
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 51.2 bits (117), Expect = 6e-07
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +3
Query: 288 PNYPMAS--LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 461
P YP L+VG+L +T L F G V+ RV D T RS GY +V + A
Sbjct: 170 PLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKA 229
Query: 462 DAERALDSMNFDIIKGRPIRIMWSQ 536
+ E AL+S++ ++GR IR+ +Q
Sbjct: 230 EMETALESLDGFELEGRAIRVNLAQ 254
Score = 39.1 bits (87), Expect = 0.003
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Frame = +3
Query: 285 PPNYPMASLYVGDLHSDITEAMLFEKFSS-AGPVLSIRVCRDMITRRSLGYAYVNFQQPA 461
PP LY G+L ++ A L + A P L + V + T +S G+A+V
Sbjct: 79 PPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPEL-VEVLYNRDTGQSRGFAFVTMSNVE 137
Query: 462 DAERALDSMNFDIIKGRPIRIMWSQR-DPS---LRKSGVGNVFIKNLDKTIDNKAMYDTF 629
D +D+++ GR +++ ++ + P+ L +F+ NL T+ ++++ F
Sbjct: 138 DCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAF 197
Query: 630 SAFGNILSCKV 662
G+++ +V
Sbjct: 198 RECGDVVGARV 208
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P SLYV L +TE L + F+ G V + + D TR S G+ +++ + DA R
Sbjct: 43 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 102
Query: 477 LDSMNFDIIKGRPI---RIMWSQ 536
+ S++ +++GR I + +W Q
Sbjct: 103 IRSLDHSVLQGRVITVEKFLWQQ 125
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 50.8 bits (116), Expect = 8e-07
Identities = 31/90 (34%), Positives = 42/90 (46%)
Frame = +3
Query: 282 GPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 461
G Y LY+G L E L + FSS V RV + +T RS GY +VNF
Sbjct: 24 GSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISED 83
Query: 462 DAERALDSMNFDIIKGRPIRIMWSQRDPSL 551
A A+ +MN + G I + ++ PSL
Sbjct: 84 SANSAISAMNGQELNGFNISVNVAKDWPSL 113
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/74 (31%), Positives = 43/74 (58%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
A +YVG + D+TE L FS G ++ + + RD T +S G+A++ ++ A+D
Sbjct: 36 AYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVD 95
Query: 483 SMNFDIIKGRPIRI 524
++N ++ GR I++
Sbjct: 96 NLNGALVLGRTIKV 109
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/81 (30%), Positives = 44/81 (54%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P SLYV L +TE L + F+ G V + + D TR S G+ +++ + DA R
Sbjct: 73 PGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRC 132
Query: 477 LDSMNFDIIKGRPIRIMWSQR 539
+ S++ +++GR I + ++R
Sbjct: 133 IRSLDHSVLQGRVITVEKARR 153
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
L+ GDL +++ + +L + F+ +V RD T ++ GY +V+F PAD AL M
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 489 NFDIIKGRPIRI---MWSQR 539
N + RPI++ W +R
Sbjct: 199 NGKYVGNRPIKLRKSSWKER 218
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/64 (35%), Positives = 39/64 (60%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
++SL+V ++E L + FS G V ++++ + TR+SLGY YV F DA+ A+
Sbjct: 57 ISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAV 116
Query: 480 DSMN 491
++MN
Sbjct: 117 EAMN 120
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +3
Query: 537 RDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
R+ S S + ++F+K ++ + FS FG + + K+
Sbjct: 48 REASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKI 89
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAG--PVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
+++VGDLH + EA L F+S ++S++V R+ S GY +V F+ A++ L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 480 DSMNFDIIKG--RPIRIMW---SQRDPSLRKSGVG-NVFIKNLDKTIDNKAMYDTFS-AF 638
N + +P R+ W S + L +G ++F+ +L + + +++TFS +
Sbjct: 162 REFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 639 GNILSCKV 662
++ + KV
Sbjct: 222 PSVKAAKV 229
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAG--PVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
+++VGDLH + EA L F+S ++S++V R+ S GY +V F+ A++ L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 480 DSMNFDIIKG--RPIRIMW---SQRDPSLRKSGVG-NVFIKNLDKTIDNKAMYDTFS-AF 638
N + +P R+ W S + L +G ++F+ +L + + +++TFS +
Sbjct: 162 REFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 639 GNILSCKV 662
++ + KV
Sbjct: 222 PSVKAAKV 229
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P +YVG+L D+ L + FS G V+ RV D T RS G+ +V + A
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Query: 477 LDSMNFDIIKGRPIRIMWSQRDPSLR 554
+ +++ ++GR IR+ ++ P R
Sbjct: 302 ISALDGQNLEGRAIRVNVAEERPPRR 327
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P +L+VG L TE L E S G + ++R+ R ++T S GY +V ++ + RA
Sbjct: 62 PYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRA 121
Query: 477 LDSMNFDIIKGRPIRIMWSQR 539
+ + +I GR I + ++++
Sbjct: 122 YEDAHHSLIDGREIIVDYNRQ 142
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
S+YVG L DITE + FS G VL++++ D R Y +V F A+ A++
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKC-YGFVTFSNRRSADDAIED 66
Query: 486 MNFDIIKGRPIRI 524
M+ I GR +R+
Sbjct: 67 MDGKSIGGRAVRV 79
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 47.6 bits (108), Expect = 7e-06
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
+L+VGDL + E L FS V S++V R+ T +S GY +V F + AE AL S
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 486 MNFDIIKG--RPIRIMWSQRDPSLRKSGVG----NVFIKNLDKTIDNKAMYDTFSA-FGN 644
+ + +P R+ W+ +++ ++F+ +L + + + +TF+ + +
Sbjct: 180 FSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPS 239
Query: 645 ILSCKV 662
+ KV
Sbjct: 240 VKGAKV 245
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/90 (27%), Positives = 45/90 (50%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
++++VG L +D+TE L + FS G V+S+++ G +V F AE A+
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKI------PVGKGCGFVQFANRQSAEEAIG 380
Query: 483 SMNFDIIKGRPIRIMWSQRDPSLRKSGVGN 572
++N +I +R+ W + +S GN
Sbjct: 381 NLNGTVIGKNTVRLSWGRSPNKQWRSDSGN 410
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/89 (28%), Positives = 43/89 (48%)
Frame = +3
Query: 279 PGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 458
P Y +LY+G L + + L FSS G ++ +V +D +T S GY +V +
Sbjct: 472 PPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADV 531
Query: 459 ADAERALDSMNFDIIKGRPIRIMWSQRDP 545
A A+ +MN +GR + + + + P
Sbjct: 532 QMANTAVQAMNGYRFEGRTLAVRIAGKSP 560
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/89 (28%), Positives = 43/89 (48%)
Frame = +3
Query: 279 PGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQP 458
P Y +LY+G L + + L FSS G ++ +V +D +T S GY +V +
Sbjct: 472 PPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADV 531
Query: 459 ADAERALDSMNFDIIKGRPIRIMWSQRDP 545
A A+ +MN +GR + + + + P
Sbjct: 532 QMANTAVQAMNGYRFEGRTLAVRIAGKSP 560
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++Y+G++ TE L+E FS AG + I + D T+ G+ +V F D E A+
Sbjct: 35 TVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKY 94
Query: 486 MNFDIIKGRPIRI 524
++ I+ RPIR+
Sbjct: 95 ISGTILDDRPIRV 107
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/79 (30%), Positives = 40/79 (50%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
SL V +L D + L F GPV I + RD T G+ ++ F PADA A
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 486 MNFDIIKGRPIRIMWSQRD 542
M+ ++ GR + +++++ +
Sbjct: 98 MDGYLLLGRELTVVFAEEN 116
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/79 (31%), Positives = 41/79 (51%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
SL V +L D + L + F GPV I + RD T G+ +V F PADA A
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 486 MNFDIIKGRPIRIMWSQRD 542
M+ ++ GR + +++++ +
Sbjct: 97 MDGYLLLGRELTVVFAEEN 115
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/101 (30%), Positives = 51/101 (50%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
L+V +L TE L E FS+ G + + + D T+RS G AY+ + P A RA++ +
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 322
Query: 489 NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNK 611
+ +GR + I+ ++ + K V + NL KT K
Sbjct: 323 DNSSFQGRLLHILPAKHRETSDKQ-VNDT--SNLPKTFKQK 360
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNF---QQPADA 467
P L+V ++ + T+ L + FS G + S+R+ + I + + GYA+V F Q+ +A
Sbjct: 667 PCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYA-GYAFVEFVTKQEALNA 725
Query: 468 ERALDSMNFDIIKGRPIRIMWSQRDPSL 551
++AL S +F GR + + W+ D S+
Sbjct: 726 KKALASTHF---YGRHLVLEWANDDNSM 750
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/87 (31%), Positives = 42/87 (48%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
+ ++VG L D + +++ F G +L + D +TRRS GY +V F+ A RA
Sbjct: 16 LTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
Query: 480 DSMNFDIIKGRPIRIMWSQRDPSLRKS 560
+ + II GR + LRKS
Sbjct: 76 ED-STPIINGRRANCNLASLGGRLRKS 101
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
+++G LH D T + + F G + + RD T + G+ ++ F P+ ++ ++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 489 NFDIIKGRPIRIMWS----QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSC 656
+ +I G+ + I + + +F+ + T+ + D F+ +GN++
Sbjct: 81 H--VINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138
Query: 657 KV 662
+V
Sbjct: 139 QV 140
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG + S +TE L + F+ G V+ +V RD T RS G+ +V F + L
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 489 NFDIIKGRPIRIMWSQRDPSLRKS 560
N + + I ++ SL +S
Sbjct: 171 NMIDMADTQVEIKKAEPKKSLNRS 194
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
+++G LH D T + + F G + + RD T + G+ ++ F P+ ++ ++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 489 NFDIIKGRPIRIMWS----QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSC 656
+ +I G+ + I + + +F+ + T+ + D F+ +GN++
Sbjct: 81 H--VINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138
Query: 657 KV 662
+V
Sbjct: 139 QV 140
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG + S +TE L + F+ G V+ +V RD T RS G+ +V F D+E +D +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF----DSEEVVDEL 166
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/80 (32%), Positives = 40/80 (50%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
L++G L +A L + F+ G V+ +V D T RS G+ +VNF A A+ M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 489 NFDIIKGRPIRIMWSQRDPS 548
+ + GR IR+ + PS
Sbjct: 97 DGKELNGRHIRVNPANDRPS 116
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/80 (32%), Positives = 40/80 (50%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
L++G L +A L + F+ G V+ +V D T RS G+ +VNF A A+ M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 489 NFDIIKGRPIRIMWSQRDPS 548
+ + GR IR+ + PS
Sbjct: 97 DGKELNGRHIRVNPANDRPS 116
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/83 (24%), Positives = 41/83 (49%)
Frame = +3
Query: 276 NPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQ 455
+P P +L+V L+ + +E+ + +F S GP+ + + D +T + GYA++ +
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMH 188
Query: 456 PADAERALDSMNFDIIKGRPIRI 524
D + A + I GR + +
Sbjct: 189 TRDMKAAYKQADGQKIDGRRVLV 211
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/85 (31%), Positives = 41/85 (48%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
A++ V L IT A L E FS GPV + + + G+A+V F D RA++
Sbjct: 20 ATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIE 79
Query: 483 SMNFDIIKGRPIRIMWSQRDPSLRK 557
N + GR I + + PSL++
Sbjct: 80 LKNGSTVGGRRITVKQAAHRPSLQE 104
Score = 38.3 bits (85), Expect = 0.005
Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
+L++ +L D+T+ + ++F+ G V S+ + +T+R G A+V F+ + A+ +
Sbjct: 562 TLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISA 621
Query: 486 MNFD-----IIKGRPIRIM-----WSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSA 635
+ ++KGR + +M + +D L+K+ NV +NL + + + DT +A
Sbjct: 622 ADTASGVGVLLKGRQLNVMRAVGKKAAKDIELKKTEEKNVDHRNLYLAKEGQILDDTPAA 681
Query: 636 FG 641
G
Sbjct: 682 EG 683
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 363 FSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRIMWS 533
FS+ G V + + ++ T G+A+V F DA A+ N + RPI + W+
Sbjct: 351 FSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWA 407
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/84 (28%), Positives = 42/84 (50%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG++ D TE L E GPV+S R+ D T + GY + ++ A A ++
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 489 NFDIIKGRPIRIMWSQRDPSLRKS 560
I GR +R+ +++ D K+
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKT 94
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P +LYV L + +T+ L F+ G V S + + TR S G+A+V DAER
Sbjct: 70 PGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERC 129
Query: 477 LDSMNFDIIKGR 512
+ +N +++GR
Sbjct: 130 IKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P +LYV L + +T+ L F+ G V S + + TR S G+A+V DAER
Sbjct: 69 PGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERC 128
Query: 477 LDSMNFDIIKGR 512
+ +N +++GR
Sbjct: 129 IKYLNQSVLEGR 140
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 44.4 bits (100), Expect = 7e-05
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +3
Query: 294 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
+P +L+V +++S + ++ L F G + S+ +S G+ +++ A
Sbjct: 182 HPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISYYDIRAAHA 236
Query: 474 ALDSMNFDIIKGRPIRIMWS--QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNI 647
A+ ++ +++ R + I +S + +PS + G + I N+D T+ N + F A+G I
Sbjct: 237 AMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEI 296
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 44.4 bits (100), Expect = 7e-05
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +3
Query: 294 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
+P +L+V +++S + ++ L F G + S+ +S G+ +++ A
Sbjct: 195 HPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISYYDIRAAHA 249
Query: 474 ALDSMNFDIIKGRPIRIMWS--QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNI 647
A+ ++ +++ R + I +S + +PS + G + I N+D T+ N + F A+G I
Sbjct: 250 AMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEI 309
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE--- 470
M+ +YVG+L +TE L ++F + G V S+ + RR GYA+++F+ P DA
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSV-----WVARRPPGYAFLDFEDPRDARDAI 55
Query: 471 RALDSMN 491
RALD N
Sbjct: 56 RALDGKN 62
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/91 (29%), Positives = 43/91 (47%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
A L+VGDLH T+A L + G V ++ + + +S GY V F P A D
Sbjct: 234 AFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKD 293
Query: 483 SMNFDIIKGRPIRIMWSQRDPSLRKSGVGNV 575
++N GRP + ++ S+++ G V
Sbjct: 294 ALNGYPFNGRPCVVEYAS-PYSVKRMGEAQV 323
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVC---RDMITRRSLGYAYVNFQQPADAERA 476
+LYVG+L + E L F GP+ S+++ D RR +V+F AD + A
Sbjct: 180 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAA 239
Query: 477 LDSMNFDIIKGRPIRIMWSQ 536
D M I+ ++I W +
Sbjct: 240 KDEMQGIIVYEYELKIGWGK 259
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
+ +Y+G + +D TE L S G V +R+ R+ + GYA+V F+ A A+D
Sbjct: 92 SEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID 151
Query: 483 SMNFDIIKGRPIRIMWSQ 536
++N +G+ I+ +Q
Sbjct: 152 TLNNTDFRGKRIKCSTTQ 169
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
+LY+ +L DIT+ L F G +L + + + Y +V++ + RAL
Sbjct: 269 ALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRAL 326
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/81 (32%), Positives = 39/81 (48%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
S+ V +L D E L E F G V + V D T S G+ +VNF DA+RA++
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 486 MNFDIIKGRPIRIMWSQRDPS 548
+N +R+ W+ P+
Sbjct: 274 LNGYGYDNLILRVEWATPRPT 294
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 43.6 bits (98), Expect = 1e-04
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +3
Query: 279 PGP-PNYPMASLYVGDLHSDITEAMLFEKFSSA--GPVLSIRVCRDMITRRSLGYAYVNF 449
P P P LYV +L L E F++A PV S RV RS GY +V+F
Sbjct: 185 PSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSF 243
Query: 450 QQPADAERALDSMNFDIIKGRPIRIMWSQRDPSLRKSG 563
+AE A+ +N I GRPI + +S R S + G
Sbjct: 244 ATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDG 281
Score = 31.1 bits (67), Expect = 0.68
Identities = 18/77 (23%), Positives = 39/77 (50%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
L+V +L ++ + E F G V ++ + R ++ G+A+V +A+ A+D
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 489 NFDIIKGRPIRIMWSQR 539
+ + GR I + +++R
Sbjct: 156 DTFQVSGRIISVSFARR 172
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/78 (26%), Positives = 42/78 (53%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
+ +++G L D+ E L + G + +R+ +D + S GYA+V F+ A++A++
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 483 SMNFDIIKGRPIRIMWSQ 536
++ KG+ IR S+
Sbjct: 176 ELHSKEFKGKTIRCSLSE 193
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/134 (22%), Positives = 68/134 (50%), Gaps = 3/134 (2%)
Frame = +3
Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRV-CRDMITRRSLG 431
N+ + ++N G P +L VG++ S++ + L F G + ++ C++ R +
Sbjct: 203 NNSVGELNRG--EIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKN---RGFIM 257
Query: 432 YAYVNFQQPADAERALDSMNFDIIKGRPIRIMWS--QRDPSLRKSGVGNVFIKNLDKTID 605
+Y + + +A RAL + +++G + I +S + +PS + + G + + NLD +I
Sbjct: 258 VSYCDIRAAQNAARALQNK---LLRGTKLDIRYSISKENPSQKDTSKGALLVNNLDSSIS 314
Query: 606 NKAMYDTFSAFGNI 647
N+ + ++G +
Sbjct: 315 NQELNRLVKSYGEV 328
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Frame = +3
Query: 276 NPGPPNYP--MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNF 449
N G + P SLY+ +L + ++E MLF FS G V+ + +D S G+A++ F
Sbjct: 6 NHGSSSCPRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEF 64
Query: 450 QQPADAERALDSMNFDIIKGRPIRIMWSQRDPSL 551
+ A RA+ M+ +I G+ +I+ QR P +
Sbjct: 65 ESADSAGRAMLHMDGRLI-GQ--KILCVQRTPKV 95
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 479
++YVG+L DI E + + FS GPV+ I + I R GYA+V F+ DA+ A+
Sbjct: 8 TIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 480 -DSMNFD 497
D +FD
Sbjct: 65 RDGYDFD 71
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 479
++YVG+L DI E + + FS GPV+ I + I R GYA+V F+ DA+ A+
Sbjct: 8 TIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 480 -DSMNFD 497
D +FD
Sbjct: 65 RDGYDFD 71
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
+Y G+L ++T L + F VL +V + T RS G+ +++F+ + + AL +M
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 489 NFDIIKGRPIRI-MWSQRD 542
N ++GR +R+ + S+R+
Sbjct: 281 NGVEVEGRALRLNLASERE 299
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 42.7 bits (96), Expect = 2e-04
Identities = 29/81 (35%), Positives = 43/81 (53%)
Frame = +3
Query: 282 GPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 461
GP + LYVG+LH +++E L + F S G V ++V RD T G+ +V F +
Sbjct: 278 GPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLE 336
Query: 462 DAERALDSMNFDIIKGRPIRI 524
DA AL+ I GR I++
Sbjct: 337 DARNALNLNGQLEIAGRAIKV 357
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
LYVG+LH +++E L + F + GPV +++ D T + G+ ++ F Q ++ A ++
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 489 NFDI-IKGRPIRI 524
N + I GR I++
Sbjct: 327 NGKLEIAGRTIKV 339
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 479
++YVG+L DI E + + FS GPV+ I + + R GYA+V F DAE A+
Sbjct: 8 TVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 480 -DSMNFD 497
D +FD
Sbjct: 65 RDGYDFD 71
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 479
++YVG+L DI E + + FS GPV+ I + + R GYA+V F DAE A+
Sbjct: 8 TVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 480 -DSMNFD 497
D +FD
Sbjct: 65 RDGYDFD 71
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 479
++YVG+L DI E + + FS GPV+ I + + R GYA+V F DAE A+
Sbjct: 8 TVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 480 -DSMNFD 497
D +FD
Sbjct: 65 RDGYDFD 71
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 41.9 bits (94), Expect = 4e-04
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +3
Query: 261 KIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSS-AGPVLSIRVCRDMITRRSLGYA 437
K + P P +L+V +L + L E F + G V+S V RRS GY
Sbjct: 175 KTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYG 234
Query: 438 YVNFQQPADAERALDSMNFDIIKGRPIRIMWSQRDPSLR-KSGV 566
+V+F+ AE AL GRPIR+ S++ L+ K G+
Sbjct: 235 FVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGL 278
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 470
L++G + D E L E FSS G V+ + +D T R+ G+ +V F PA AE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
Score = 36.3 bits (80), Expect = 0.018
Identities = 22/90 (24%), Positives = 39/90 (43%)
Frame = +3
Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGY 434
NS + +PG P ++VG L S +TE+ F G + V D T+R G+
Sbjct: 93 NSSSIQGSPGGPGRTR-KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGF 151
Query: 435 AYVNFQQPADAERALDSMNFDIIKGRPIRI 524
++ + E+ L F + G+ + +
Sbjct: 152 GFITYDSEEAVEKVL-LKTFHELNGKMVEV 180
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 470
L++G + D E L E FSS G V+ + +D T R+ G+ +V F PA AE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
Score = 36.3 bits (80), Expect = 0.018
Identities = 22/90 (24%), Positives = 39/90 (43%)
Frame = +3
Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGY 434
NS + +PG P ++VG L S +TE+ F G + V D T+R G+
Sbjct: 93 NSSSIQGSPGGPGRTR-KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGF 151
Query: 435 AYVNFQQPADAERALDSMNFDIIKGRPIRI 524
++ + E+ L F + G+ + +
Sbjct: 152 GFITYDSEEAVEKVL-LKTFHELNGKMVEV 180
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/77 (33%), Positives = 40/77 (51%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++YV D+ +TE L FSS G V+ R+C D L +A+V F A AL S
Sbjct: 129 TVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGD--PNSVLRFAFVEFSDDQGARSAL-S 185
Query: 486 MNFDIIKGRPIRIMWSQ 536
+ +I P+R++ S+
Sbjct: 186 LGGTMIGYYPVRVLPSK 202
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 479
++YVG+L DI + + + F GP++ I + I R GYA+V F+ P DA+ A+
Sbjct: 8 TIYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDADDAIYG 64
Query: 480 -DSMNFD 497
D +FD
Sbjct: 65 RDGYDFD 71
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +3
Query: 294 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
+P +L+V +++S++ ++ L F G + ++ T + G+ +++ A
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSARM 219
Query: 474 ALDSMNFDIIKGRPIRIMWS--QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNI 647
A+ S+ ++ R + I +S + +PS + G + + NLD +I N ++ F A G I
Sbjct: 220 AMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEI 279
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +3
Query: 294 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
+P +L+V +++S++ ++ L F G + ++ T + G+ +++ A
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSARM 219
Query: 474 ALDSMNFDIIKGRPIRIMWS--QRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNI 647
A+ S+ ++ R + I +S + +PS + G + + NLD +I N ++ F A G I
Sbjct: 220 AMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEI 279
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/92 (23%), Positives = 45/92 (48%)
Frame = +3
Query: 249 NCNSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSL 428
N ++ + +PGP N ++VG L S +TEA + F+ G + + V D T+R
Sbjct: 17 NKSNSSLQGSPGPSN--SKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPR 74
Query: 429 GYAYVNFQQPADAERALDSMNFDIIKGRPIRI 524
G+ ++++ ++ L F + G+ + +
Sbjct: 75 GFGFISYDSEEAVDKVLQK-TFHELNGKMVEV 105
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/92 (23%), Positives = 45/92 (48%)
Frame = +3
Query: 249 NCNSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSL 428
N ++ + +PGP N ++VG L S +TEA + F+ G + + V D T+R
Sbjct: 90 NKSNSSLQGSPGPSN--SKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPR 147
Query: 429 GYAYVNFQQPADAERALDSMNFDIIKGRPIRI 524
G+ ++++ ++ L F + G+ + +
Sbjct: 148 GFGFISYDSEEAVDKVLQK-TFHELNGKMVEV 178
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/92 (23%), Positives = 45/92 (48%)
Frame = +3
Query: 249 NCNSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSL 428
N ++ + +PGP N ++VG L S +TEA + F+ G + + V D T+R
Sbjct: 90 NKSNSSLQGSPGPSN--SKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPR 147
Query: 429 GYAYVNFQQPADAERALDSMNFDIIKGRPIRI 524
G+ ++++ ++ L F + G+ + +
Sbjct: 148 GFGFISYDSEEAVDKVLQK-TFHELNGKMVEV 178
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 41.1 bits (92), Expect = 6e-04
Identities = 27/96 (28%), Positives = 47/96 (48%)
Frame = +3
Query: 291 NYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 470
N P L+VG+L I E L ++F G + S+ + YA+VNF DA
Sbjct: 19 NPPSRHLWVGNLPHGILERELADRFLRFGELESLAF------QPGRSYAFVNFNHDEDAF 72
Query: 471 RALDSMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVF 578
A++S+ + G P+RI +++ + S S +++
Sbjct: 73 AAIESLQGFPLSGNPLRIEFAKAEKSSTGSRTDDIY 108
Score = 31.9 bits (69), Expect = 0.39
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +3
Query: 297 PMASLYVGDLHS-DITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
P LY+G S + +A+L FSS G + + V RS YA+V F+ A +
Sbjct: 149 PSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTV----FPGRS--YAFVQFRNLMAACK 202
Query: 474 ALDSMNFDIIKGRPIRIMWSQRDPSLRKSGVG 569
A +S+ + + I +++ +PS SG G
Sbjct: 203 AKESLQGKLFGNPRVHICFAKSEPSSSGSGRG 234
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
+ ++VG + E L E FS G V+ ++ D T RS G+A+V F +A A+
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 483 SMNFDIIKGRPIRIMWS 533
D + GR IR+ ++
Sbjct: 94 LDGQD-LHGRRIRVNYA 109
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 40.7 bits (91), Expect = 8e-04
Identities = 25/74 (33%), Positives = 35/74 (47%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
SL V ++ D L E F GPV + + RD + + G+A+V F DA A S
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
Query: 486 MNFDIIKGRPIRIM 527
MN GR I ++
Sbjct: 108 MNRRSFAGREITVV 121
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++YV D+ + +TE L F S G V+ R+C D + L +A++ F A AL
Sbjct: 138 TVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDY--KSILRFAFIEFTDAEGARSALRK 195
Query: 486 MNFDIIKGRPIRIMWSQ 536
+ PIR+ S+
Sbjct: 196 SG-TMFGSHPIRVFMSK 211
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/78 (30%), Positives = 44/78 (56%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
+Y+G+L D TE + + FS + S+R+ ++ T GYA+V+F+ AL +
Sbjct: 264 VYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIAL-KL 321
Query: 489 NFDIIKGRPIRIMWSQRD 542
+ +I GRP++I + +D
Sbjct: 322 DQQVICGRPVKICCALKD 339
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++YV D+ +TE L FS+ G V+ R+C D L +A+V F A AL S
Sbjct: 142 TVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGD--PHSVLRFAFVEFADDQGAHEAL-S 198
Query: 486 MNFDIIKGRPIRIMWSQ 536
+ ++ P+R++ S+
Sbjct: 199 LGGTMLGFYPVRVLPSK 215
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
P A++ V L TE L++ + GP+ +RV R+ + S G+A+++F A
Sbjct: 296 PSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTM 355
Query: 477 LDSMNFD--IIKGRPIRIMWSQ 536
+D + D ++ GR + +SQ
Sbjct: 356 MDRIEHDGIVLDGRKLMFHYSQ 377
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
M+ +YVG+L +TE L ++F S G + S+ + RR GYA+++F+ DA A+
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSV-----WVARRPPGYAFLDFEDSRDARDAI 55
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +3
Query: 285 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 464
P + + +LYVG L+S I E + ++F + G + SIR+ D A+V +
Sbjct: 222 PDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADK------ACAFVTYTSREG 275
Query: 465 AERALDSM-NFDIIKGRPIRIMWSQRDP 545
AE+A + N +I G+ +++ W + P
Sbjct: 276 AEKAAQELSNRLVINGQRLKLTWGRPKP 303
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/85 (28%), Positives = 42/85 (49%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
L+VG+LH T+A + S G V I+ + ++ +S GY V F A A + M
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 489 NFDIIKGRPIRIMWSQRDPSLRKSG 563
N I G+ + ++ + +L++ G
Sbjct: 264 NGFIFNGKACVVAFASPE-TLKQMG 287
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Frame = +3
Query: 255 NSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVC---RDMITRRS 425
+ ++ ++ G P +LYV +L S + E L F GP+ S+++ + RR
Sbjct: 173 SGRLGSLDDGDPQ--TTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRE 230
Query: 426 LGYAYVNFQQPADAERALDSMNFDIIKGRPIRIMWSQ 536
+V F AD E A + M I+ ++I W +
Sbjct: 231 RHCGFVAFMNRADGEAAKEKMQGIIVYEYELKIGWGK 267
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 285 PPNYPMAS-LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 461
PP A+ LY+G + E + FS G V +RV R+ T +S + ++ F+ P
Sbjct: 53 PPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPE 112
Query: 462 DAERALDSMN 491
AE A +MN
Sbjct: 113 VAEIAAGAMN 122
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
A+L++ ++ + + L F S G VLS +V D T S + +V++ A A+ A+D
Sbjct: 349 ANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAID 408
Query: 483 SMNFDIIKGRPIRI 524
MN + G+ +++
Sbjct: 409 MMNGRHLGGKKLKV 422
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
L+VG + ++E+ L F V + + +D ITR S G ++ +A++ +++
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Query: 489 -NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
N + G + D L + +F+ L K + + FS +G I ++
Sbjct: 80 HNKKTLPGANSLLQVKYADGELERL-EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI 137
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++YV D+ +TE L F + G V+ RVC D L +A++ F A AL S
Sbjct: 170 TVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGD--PNSVLRFAFIEFTNEEGARAAL-S 226
Query: 486 MNFDIIKGRPIRIMWSQ 536
M+ ++ P++++ S+
Sbjct: 227 MSGTVLGFYPLKVLPSK 243
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
+ ++VG L + + F G ++ V D T RS GY +V F++ A RA
Sbjct: 21 LTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRAC 80
Query: 480 DSMNFDIIKGR 512
+MN +I GR
Sbjct: 81 QNMN-PVIDGR 90
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L TE + E S GP+ + +D T S GYA+ +Q P+ + A ++
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 489 N 491
N
Sbjct: 437 N 437
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/80 (27%), Positives = 41/80 (51%)
Frame = +3
Query: 285 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 464
PPN L+V +L + +F+ F+ G V+SIR+ + + +GY +V F +
Sbjct: 238 PPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNH-EGKHVGYGFVEFASADE 296
Query: 465 AERALDSMNFDIIKGRPIRI 524
++AL++ N + + I I
Sbjct: 297 TKKALENKNGEYLHDHKIFI 316
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L +T+ + F GPV + + D T R G+ +V+F D+E A+DS+
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF----DSEDAVDSV 167
Query: 489 ---NFDIIKGRPIRI 524
F + G+ + +
Sbjct: 168 LHKTFHDLSGKQVEV 182
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/68 (35%), Positives = 31/68 (45%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L + L + F G +L V D T RS GY +V F+ P A RA
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 489 NFDIIKGR 512
II GR
Sbjct: 86 T-PIIDGR 92
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++YV DL +TE L F S G V+ R+C D L +A++ F A AL +
Sbjct: 174 TVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGD--PNSVLRFAFIEFTDEEGAMTAL-N 230
Query: 486 MNFDIIKGRPIRIMWSQ 536
++ ++ P++++ S+
Sbjct: 231 LSGTMLGFYPVKVLPSK 247
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
L+VG + ++E+ L F V + + +D ITR S G ++ +A++ +++
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Query: 489 -NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
N + G + D L + +F+ L K + + FS +G I ++
Sbjct: 80 HNKKTLPGANSLLQVKYADGELERL-EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI 137
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/74 (24%), Positives = 40/74 (54%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
A+L++ ++ + + L F G VLS +V D T S + ++++ A A+ A++
Sbjct: 339 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
Query: 483 SMNFDIIKGRPIRI 524
+MN + G+ +++
Sbjct: 399 TMNGCQLSGKKLKV 412
Score = 30.7 bits (66), Expect = 0.90
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 570 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
N+FI N+ + +++ + TF FG +LS KV
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKV 370
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/74 (24%), Positives = 40/74 (54%)
Frame = +3
Query: 303 ASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 482
A+L++ ++ + + L F G VLS +V D T S + ++++ A A+ A++
Sbjct: 330 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389
Query: 483 SMNFDIIKGRPIRI 524
+MN + G+ +++
Sbjct: 390 TMNGCQLSGKKLKV 403
Score = 30.7 bits (66), Expect = 0.90
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 570 NVFIKNLDKTIDNKAMYDTFSAFGNILSCKV 662
N+FI N+ + +++ + TF FG +LS KV
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKV 361
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L S ITEA F G + + V D T+R G+ ++ F + L
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK- 182
Query: 489 NFDIIKGRPIRI 524
F + G+ + +
Sbjct: 183 TFHELNGKMVEV 194
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/77 (27%), Positives = 39/77 (50%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 485
++YV D+ +TE L F G V+ R+C D L +A++ F A AL +
Sbjct: 151 TVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGD--PNSVLRFAFIEFTDEVGARTAL-N 207
Query: 486 MNFDIIKGRPIRIMWSQ 536
++ ++ P+++M S+
Sbjct: 208 LSGTMLGFYPVKVMPSK 224
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 285 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 464
P + + +LYVG L+S + E + ++F + G + SIR+ + A+V +
Sbjct: 222 PEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEK------ACAFVTYTTREG 275
Query: 465 AERALDSM-NFDIIKGRPIRIMWSQ 536
AE+A + + N ++ G+ +++ W +
Sbjct: 276 AEKAAEELSNRLVVNGQRLKLTWGR 300
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
++VG L + L F G +L V D T RS GY +V F+ P A RA
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 35.9 bits (79), Expect = 0.024
Identities = 25/90 (27%), Positives = 44/90 (48%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
M +YVG+L +TE L ++F + G + ++ + RR GYA++ F DA A+
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNV-----WVARRPPGYAFLEFDDERDALDAI 55
Query: 480 DSMNFDIIKGRPIRIMWSQRDPSLRKSGVG 569
+++ + R+ S +D R G G
Sbjct: 56 SALD----RKNGWRVELSHKDKGGRGGGGG 81
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 35.9 bits (79), Expect = 0.024
Identities = 25/90 (27%), Positives = 44/90 (48%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
M +YVG+L +TE L ++F + G + ++ + RR GYA++ F DA A+
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNV-----WVARRPPGYAFLEFDDERDALDAI 55
Query: 480 DSMNFDIIKGRPIRIMWSQRDPSLRKSGVG 569
+++ + R+ S +D R G G
Sbjct: 56 SALD----RKNGWRVELSHKDKGGRGGGGG 81
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 35.5 bits (78), Expect = 0.032
Identities = 22/83 (26%), Positives = 43/83 (51%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
LYV +L +IT +++ F G + IR+ D T+ G A+V ++ DA+ A+D +
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATK---GTAFVVYEDIYDAKNAVDHL 77
Query: 489 NFDIIKGRPIRIMWSQRDPSLRK 557
+ + R + +++ Q +K
Sbjct: 78 SGFNVANRYLIVLYYQHAKMSKK 100
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.1 bits (77), Expect = 0.042
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L S ITE F G + + V D T+R G+ ++ F +R L
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK- 170
Query: 489 NFDIIKGRPIRI 524
F + G+ + +
Sbjct: 171 TFHELNGKLVEV 182
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.1 bits (77), Expect = 0.042
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L S ITE F G + + V D T+R G+ ++ F +R L
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK- 170
Query: 489 NFDIIKGRPIRI 524
F + G+ + +
Sbjct: 171 TFHELNGKLVEV 182
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.1 bits (77), Expect = 0.042
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L S ITE F G + + V D T+R G+ ++ F +R L
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK- 170
Query: 489 NFDIIKGRPIRI 524
F + G+ + +
Sbjct: 171 TFHELNGKLVEV 182
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 34.7 bits (76), Expect = 0.056
Identities = 13/58 (22%), Positives = 34/58 (58%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
++Y+G++ +++ +L++ AG V+ + + RD T + G+A+ ++ A+ A+
Sbjct: 8 TVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L + + F G +L + D T +S GY +V F++ A RA+
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 489 NFDIIKGR 512
N +I GR
Sbjct: 79 N-PVIDGR 85
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L + + F G +L + D T +S GY +V F++ A RA+
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 489 NFDIIKGR 512
N +I GR
Sbjct: 79 N-PVIDGR 85
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L + + F G +L + D T +S GY +V F+ A RA+
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Query: 489 NFDIIKGR 512
N +I GR
Sbjct: 79 N-PVIDGR 85
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L D+TE L F G + ++ T R G+ ++ F A+ A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 489 N 491
+
Sbjct: 74 H 74
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L D+TE L F G + ++ T R G+ ++ F A+ A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 489 N 491
+
Sbjct: 74 H 74
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
+ ++VG+L T L F G V+ V + RS GY ++ F+ RAL
Sbjct: 11 VTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
Query: 480 DSMNFDIIKGR 512
+ II GR
Sbjct: 71 QNSK-PIIDGR 80
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 32.3 bits (70), Expect = 0.30
Identities = 28/116 (24%), Positives = 56/116 (48%)
Frame = +3
Query: 273 MNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ 452
+N P P SL+VG + ++++ L E+FS G + R R+ T A++++
Sbjct: 240 LNSHPYAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKT------AFIDYY 293
Query: 453 QPADAERALDSMNFDIIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMY 620
+ DA +A SMN + G +R+ + + ++ G+ N + +++K Y
Sbjct: 294 EMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGS--YDNRNGNMNHKPQY 346
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
L++ L +D T L FSS G + V D +T +S GY +V F A AL
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLAL 133
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
L++ L +D T L FSS G + V D +T +S GY +V F A AL
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLAL 133
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
++VG L + + L F G ++ V D + RS GY +V F P A++A
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 476
++VG L + + L F G ++ V D + RS GY +V F P A++A
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L + + + + F G +L V D + RS GY +V F++ A+A R+
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE-AEAARSACVD 73
Query: 489 NFDIIKGR 512
+I GR
Sbjct: 74 ATPVIDGR 81
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L + + + + F G +L V D + RS GY +V F++ A+A R+
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE-AEAARSACVD 73
Query: 489 NFDIIKGR 512
+I GR
Sbjct: 74 ATPVIDGR 81
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L + + + + F G +L V D + RS GY +V F++ A+A R+
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE-AEAARSACVD 73
Query: 489 NFDIIKGR 512
+I GR
Sbjct: 74 ATPVIDGR 81
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/78 (23%), Positives = 32/78 (41%)
Frame = +3
Query: 291 NYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 470
N ++VG L +T F + GPV + D T+R G+ +V+F +
Sbjct: 106 NVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVD 165
Query: 471 RALDSMNFDIIKGRPIRI 524
L F + G+ + +
Sbjct: 166 LVLHK-TFHDLNGKQVEV 182
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 31.5 bits (68), Expect = 0.52
Identities = 14/75 (18%), Positives = 36/75 (48%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
+ V +H + E + F G + ++ + D + GYA + +++ +A+ A+ +M
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 489 NFDIIKGRPIRIMWS 533
N + + + + W+
Sbjct: 157 NGAELLTQNVSVDWA 171
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 31.5 bits (68), Expect = 0.52
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +3
Query: 297 PMASLYVGDLHSDITEAMLF----EKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 464
P LY+ +L D+ + +F S+ S R M R G A++ F
Sbjct: 350 PSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEV 409
Query: 465 AERALDSMNFDIIKGRPIRIMWSQRDPSLRK 557
A RAL+ +N + KG+P+ I + R P K
Sbjct: 410 AHRALNLVNGFVFKGKPMIIQFG-RTPGAAK 439
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 31.1 bits (67), Expect = 0.68
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = +3
Query: 282 GPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPV----LSIRVCRDMITRRSLGYAYVNF 449
G ++ S+YV +L SDI+ + + E+F + G + + +R +D++ + YA+V F
Sbjct: 250 GFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVM---GVCYAFVEF 306
Query: 450 QQPADAERALDSMNFDIIKGRPIRIMWSQRDPS 548
+ E A+ + + GR + I + +P+
Sbjct: 307 EDMTSVENAIKASPI-YLGGRQVYIEERRPNPA 338
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 31.1 bits (67), Expect = 0.68
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = +3
Query: 282 GPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPV----LSIRVCRDMITRRSLGYAYVNF 449
G ++ S+YV +L SDI+ + + E+F + G + + +R +D++ + YA+V F
Sbjct: 309 GFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVM---GVCYAFVEF 365
Query: 450 QQPADAERALDSMNFDIIKGRPIRIMWSQRDPS 548
+ E A+ + + GR + I + +P+
Sbjct: 366 EDMTSVENAIKASPI-YLGGRQVYIEERRPNPA 397
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 31.1 bits (67), Expect = 0.68
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L TE+ + E S G + + +D T S GYA+ +Q + + A ++
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 489 NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFI 581
N + + + + + + L+K NV +
Sbjct: 421 NGIKMGDKTLTVRRANQGTMLQKPEQENVLL 451
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 31.1 bits (67), Expect = 0.68
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L TE+ + E S G + + +D T S GYA+ +Q + + A ++
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 489 NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFI 581
N + + + + + + L+K NV +
Sbjct: 421 NGIKMGDKTLTVRRANQGTMLQKPEQENVLL 451
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 31.1 bits (67), Expect = 0.68
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = +3
Query: 309 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 488
++VG L TE+ + E S G + + +D T S GYA+ +Q + + A ++
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 489 NFDIIKGRPIRIMWSQRDPSLRKSGVGNVFI 581
N + + + + + + L+K NV +
Sbjct: 421 NGIKMGDKTLTVRRANQGTMLQKPEQENVLL 451
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 31.1 bits (67), Expect = 0.68
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +3
Query: 294 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
Y LYVG L S L FS G V + + RD YA+V F P DA+
Sbjct: 8 YGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDPRDADD 59
Query: 474 A---LDSMNFD 497
A LD +FD
Sbjct: 60 ARYYLDGRDFD 70
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 30.7 bits (66), Expect = 0.90
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +3
Query: 294 YPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAER 473
Y LYVG L S L FS G V + + RD YA+V F P DA+
Sbjct: 8 YGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDPRDADD 59
Query: 474 A---LDSMNFDIIKGRPIRIMWSQRDP 545
A LD +FD G I + +S+ P
Sbjct: 60 ARHYLDGRDFD---GSRITVEFSRGAP 83
>At3g10570.1 68416.m01268 cytochrome P450, putative similar to
cytochrome P450 77A3 GB:O48928 [Glycine max]
Length = 513
Score = 30.3 bits (65), Expect = 1.2
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Frame = +3
Query: 228 ILLMST*NCNSKIFKMNPGPPNYPMASLYVGDLHSDITEAMLFEKF-----SSAGPVLSI 392
+L+++ + SKI K+ PGPP +P+ VG+L F ++ GP+ ++
Sbjct: 28 LLILTRRSAKSKIVKLPPGPPGWPV----VGNLFQFARSGKQFYEYVDDVRKKYGPIYTL 83
Query: 393 RV-CRDM--ITRRSLGYAYVNFQQPADAERALDSMNFDIIKGRPIRIMWSQRDP---SLR 554
R+ R M I+ +L + + + P A R ++ I + S P SLR
Sbjct: 84 RMGSRTMIIISDSALVHDVLIQRGPMFATRPTENPTRTIFSSNTFTVNASAYGPVWRSLR 143
Query: 555 KSGVGNV 575
K+ V N+
Sbjct: 144 KNMVQNM 150
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +3
Query: 333 DITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDI 500
D ++ L + FSS G + + V T SLGYAY++ ++ AE+AL+ D+
Sbjct: 248 DDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKE--GAEKALELGRHDV 301
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 324 LHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMNFDI 500
L D + L E FSS G + ++ V D T S G AY+ F + E+AL+ D+
Sbjct: 412 LSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE--GKEKALELNGSDM 468
>At5g50330.1 68418.m06233 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 428
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 351 LFEKFSSAGPVLSIRVCRDMITRRSLGYAYVN 446
L+E + PVL RV RDM+T+R L Y+N
Sbjct: 210 LYEN-NKKSPVLVPRVLRDMVTKRVLVMEYIN 240
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 270 KMNPGPPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNF 449
K NP P LY+ +L IT ++ F + +R+ + T+ G A+V +
Sbjct: 9 KQNPRLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTK---GTAFVVY 65
Query: 450 QQPADAERALDSM 488
+ DA++A+D +
Sbjct: 66 EDIYDAKKAVDHL 78
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 285 PPNYPMASLYVGDLHSDITEAMLFEKFSSAGPVLSIRV 398
P + + +LYVG L+S I E + + F + G + SIRV
Sbjct: 219 PEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 306 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
+LY+ +L DIT+ L F G +L + + + Y +V++ + RAL
Sbjct: 35 ALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRAL 92
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 27.9 bits (59), Expect = 6.4
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE--- 470
M ++VG+ + ++ L F G V D + +S GYA+V F+ DAE
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRV-------DRVDMKS-GYAFVYFEDERDAEDAI 52
Query: 471 RALDSMNFDIIKGRPIRIMWSQ 536
R LD+ F K R + + W++
Sbjct: 53 RKLDNFPFGYEK-RRLSVEWAK 73
>At3g26290.1 68416.m03280 cytochrome P450 71B26, putative (CYP71B26)
identical to cytochrome P450 71B26 (SP:Q9LTL0)
[Arabidopsis thaliana]; contains Pfam profile: PF00067
cytochrome P450
Length = 500
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 213 FFIAHILLMST*NCNSKIFKMNPGPPNYPMASLYVGDLH--SDITEAMLFEKFSSAGPVL 386
FFI +LL + N + P PP +P+ +G+LH ++ L++ GPV+
Sbjct: 11 FFIIFLLLAAFKRKNHGKHRRIPSPPGFPI----IGNLHQLGELQHQSLWKLSKKYGPVM 66
Query: 387 SIRV 398
+++
Sbjct: 67 LLKL 70
>At3g20950.1 68416.m02648 cytochrome P450 family protein similar to
Cytochrome P450 93A3 (P450 CP5) (SP:O81973) [Glycine
max];
Length = 526
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 279 PGPPNYPMASLYVGDLHSDITEAM--LFEKFS-SAGPVLSIRVCR-DMITRRSLGYAYVN 446
P PP++P+ S +LH ++ + F+K S GP+L +RV ++ S AY
Sbjct: 44 PSPPSFPVGSPQSNNLHLLLSALVHKSFQKISYKYGPLLHLRVFHVPIVLASSASVAYEI 103
Query: 447 FQ 452
F+
Sbjct: 104 FK 105
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.9 bits (59), Expect = 6.4
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +3
Query: 300 MASLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 479
M +YVG+ D + L FS G V + DM + GYA+V F+ DAE A+
Sbjct: 1 MRHVYVGNFDYDTRHSDLERLFSKFGRVKRV----DMKS----GYAFVYFEDERDAEDAI 52
Query: 480 ---DSMNFDIIKGRPIRIMWSQ 536
D+ F + R + + W++
Sbjct: 53 RRTDNTTFGYGR-RKLSVEWAK 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,354,394
Number of Sequences: 28952
Number of extensions: 221442
Number of successful extensions: 699
Number of sequences better than 10.0: 152
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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