Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M03
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13908| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31)                     29   2.9  
SB_6077| Best HMM Match : EGF (HMM E-Value=0)                          29   2.9  
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         29   3.8  
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_49338| Best HMM Match : Antimicrobial18 (HMM E-Value=5.8)           24   6.1  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  
SB_3199| Best HMM Match : 7tm_1 (HMM E-Value=0)                        27   8.7  

>SB_13908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +3

Query: 69  HCDAKRFTRCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVNKNGSRDYGLFQI 248
           + D  R+    ++ E  R GF   L   W  + E E  R  D+   + ++ +   GLF I
Sbjct: 270 NADDFRYQASDVIHE--RGGFTWDLFFTWKAIPEAEKKRRKDETDYI-RSPTMAGGLFAI 326

Query: 249 NDKYWCSTGSTPGK 290
           + KY+   GS   K
Sbjct: 327 HKKYFYDLGSYDSK 340


>SB_16801| Best HMM Match : MSSP (HMM E-Value=0.31)
          Length = 571

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = -2

Query: 380 KLVAFVNLLCARSCHANVVSQ*LITSHVAILSRSGPGAAPVFVIDLEEAVV-SRSVLIHF 204
           KL  F N L   SC  N+ S  + T+H  I S      +  FVID  + V+ S   +I  
Sbjct: 170 KLYPFCNKL--DSCCNNLASFVINTTHFVINSNQFVIDSTQFVIDSTQFVIDSTQFVIDS 227

Query: 203 TNFVGKPSAFVLDKADPVTHQT 138
           T FV   + FV++    V + T
Sbjct: 228 TRFVINSTRFVINSTRFVINLT 249


>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1165

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 246 IND-KYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKI--YKRHKFDAWYGWKNHCQH 416
           +ND K  C  G T GKDCH+  N+  ++      TC   +  Y     D + G   +C+ 
Sbjct: 424 VNDYKCSCLQGYT-GKDCHIDINECSSNPCQYGGTCLNLLNGYACLCIDGYTGL--NCE- 479

Query: 417 GLPDISDC 440
              DI DC
Sbjct: 480 --KDIDDC 485


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 255  KYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKI 362
            K  CSTG T GK+C V  ++  T      ATC  +I
Sbjct: 1539 KCQCSTGYT-GKNCEVNIDECATKPCLNGATCVDQI 1573


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = -1

Query: 597  LW*EICQLFLDDFRFLNISIMHNILINIFVLNYNWNL*ISLEVAL*NLKPFLNSR*YLAV 418
            LW +   +F+D      + + +N +  +F  +Y  N   S+  +L   KPF N      +
Sbjct: 1216 LWEQSQNIFIDYKAMAKLRVQYNAVEELFYFDYTQNPAFSIVKSLAKHKPFPNPLLSSLL 1275

Query: 417  HVDSDFSIRTKR 382
            HV       +KR
Sbjct: 1276 HVVEYIDQASKR 1287


>SB_49338| Best HMM Match : Antimicrobial18 (HMM E-Value=5.8)
          Length = 265

 Score = 24.2 bits (50), Expect(2) = 6.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 288 KDCHVTCNQLLTDDISVAATCAKKIYKRHKFD 383
           K C V  N LL+  + V+ T    ++KR+ F+
Sbjct: 231 KRCSVPENTLLSKQVDVSTTWKVLLHKRNLFE 262



 Score = 22.2 bits (45), Expect(2) = 6.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 204 KVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHV 302
           +V KN + D     I  +   + G+ P KDC +
Sbjct: 188 EVEKNSASDSNKASIPRQKQITFGAKPAKDCQL 220


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 24.6 bits (51), Expect(2) = 8.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 390  YGWKNHCQHGLPDIS 434
            YGW N C HG   +S
Sbjct: 2165 YGWNNCCTHGATPMS 2179



 Score = 21.0 bits (42), Expect(2) = 8.5
 Identities = 9/36 (25%), Positives = 13/36 (36%)
 Frame = +3

Query: 309  NQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQH 416
            N   T +      C  K    + +  + GW N C H
Sbjct: 2118 NNCCTHEYGWNNCCNNKYRWNNCYTHYNGWSNCCSH 2153


>SB_3199| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 399

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 266 APVFVIDLEEAVVSRSVLIHFTNFVGKPSAFVLDKADPVTHQTFIE 129
           A +F+  +   +V+   +  F NF     AF++ K +PV H T +E
Sbjct: 77  ADLFITCVSMPIVTMVNIQGFQNFTSFTLAFIVCKLNPVIHGTSME 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,837,328
Number of Sequences: 59808
Number of extensions: 354282
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)