Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M02
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   244   7e-66
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   240   1e-64
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    31   0.12 
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    29   0.48 
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    27   2.0  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   2.6  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   3.4  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   6.0  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    25   7.9  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  244 bits (597), Expect = 7e-66
 Identities = 117/162 (72%), Positives = 135/162 (83%), Gaps = 1/162 (0%)
 Frame = +3

Query: 90  KIGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVD 266
           K+GINGFGRIGR+VLR +I  G   VVA+NDPFI LDYM Y+F+YDSTHGRF+G+VE   
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 267 GHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLVGGAKKVIISAP 446
           G LV++G  I V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL GGAK+VIISAP
Sbjct: 65  GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124

Query: 447 SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHD 572
           S DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D
Sbjct: 125 SKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVIND 166


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  240 bits (587), Expect = 1e-64
 Identities = 115/162 (70%), Positives = 134/162 (82%), Gaps = 1/162 (0%)
 Frame = +3

Query: 90  KIGINGFGRIGRLVLR-ASIDKGADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVD 266
           K+GINGFGRIGR+VLR A + K   VVAINDPFI L+YM Y+F+YDSTHGRF G+VE  D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 267 GHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLVGGAKKVIISAP 446
           G LV++G  I V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL GGAK+VIISAP
Sbjct: 65  GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124

Query: 447 SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHD 572
           S DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D
Sbjct: 125 SKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVIND 166


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 152 LINRSTEHQATDATKTVNSDFRHDYGKSIFSQRSHSTFTLHKMEFVNV 9
           LI  + +HQ+T+ TKT  +   H+  ++    +  S   ++K+ + NV
Sbjct: 11  LIESTIKHQSTNYTKTETATTSHEVSENANEHKGKSNIDINKIAYYNV 58


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +3

Query: 63  KYTLTIIMSKIGINGFGRIGRLVLRASIDKGADVVAINDPF----IGLDYMVYLFQYDST 230
           KY L   +S +   G GR+  L++  SI K  D +    PF      + Y++   Q D  
Sbjct: 627 KYKLDSCVSTLTRMGLGRVSTLLVTDSISKCIDEITKASPFADHPAAMQYIMNAAQ-DIL 685

Query: 231 HGRFKGTVEAVD 266
             RF  T E V+
Sbjct: 686 RRRFHATSEQVE 697


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 97  ELTVLVASVAWCSVLRLIRV 156
           +L+V VA +AWC   RL+R+
Sbjct: 122 KLSVAVAELAWCPKSRLVRI 141


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 290 LSVYDEVSIYGLNGTLETTVSRIILEKV 207
           L +   V++ G NG  +TT+ ++ILEKV
Sbjct: 617 LDLKSRVALVGPNGAGKTTLIKLILEKV 644


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = +1

Query: 316 IPMLFHGVRLVLNTLLNQPVCSQPLIKLLLTWWVEPRK*SSPHQVLMLPCL*LVSTWKPT 495
           +P  ++ V L    L +QP+   P+I  L    V P +   PH +   P     +++ P 
Sbjct: 161 VPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNR--LPHPIHNHPYS-SPTSYPPP 217

Query: 496 ILPTKLFQMLPAQL---TASHPSQRSS 567
           + P       P QL   TA  PS +SS
Sbjct: 218 LCPATYCPSNPPQLAPATAIAPSSQSS 244


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 321 GDPSQRTQL--SSFRLRRGVHLRPQRY 247
           G P++R  L   +F +RRGVHL+  +Y
Sbjct: 163 GIPTKRKDLFPCNFFIRRGVHLKVNKY 189


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
 Frame = +3

Query: 63  KYTLTIIMS----KIGINGFGRIGRLVLRASIDKGADVVAINDPFIGLD------YMVYL 212
           +Y +TI +     ++ +N F  +G+L++  + D+  D+   ND    ++      YM Y+
Sbjct: 508 RYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQE-NDENAFMNCMAEACYMPYI 566

Query: 213 FQYDSTHGRFKG 248
           FQ  +    FKG
Sbjct: 567 FQCRAKQDNFKG 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,325
Number of Sequences: 5004
Number of extensions: 52732
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)