Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M02
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             205   2e-53
SB_8966| Best HMM Match : SAP (HMM E-Value=1.6e-08)                    30   1.2  
SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)                   30   1.5  
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)                    29   3.6  
SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28)         29   3.6  
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)                   29   3.6  
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              28   6.2  
SB_41509| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05)         28   6.2  
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 28   6.2  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         28   6.2  
SB_46976| Best HMM Match : PAN (HMM E-Value=6.9e-05)                   27   8.2  
SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   8.2  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  205 bits (501), Expect = 2e-53
 Identities = 94/123 (76%), Positives = 107/123 (86%)
 Frame = +3

Query: 204  VYLFQYDSTHGRFKGTVEAVDGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFT 383
            VY+F+YDSTHGRFKGTVEA DG LV+NGK ++VF+ +DP  IPWG+ GA+YVVESTGVFT
Sbjct: 817  VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876

Query: 384  TTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKV 563
            T +KA  HL GGAKKVIISAPSADAPMFV+GVN E YDPS  V+SNASCTTNCLAPL KV
Sbjct: 877  TLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKV 936

Query: 564  IHD 572
            I+D
Sbjct: 937  IND 939


>SB_8966| Best HMM Match : SAP (HMM E-Value=1.6e-08)
          Length = 696

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = -2

Query: 251 GTLETTVSRIILEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVNSDFRHDYGK 72
           G+L  T  +I L K   +    + ++       ++   +E Q  +   ++NS+FRHD   
Sbjct: 126 GSLNKTDLKIELGKRKLLTSGLKPVLVDRLKSYILEHESESQRGNDISSLNSNFRHDQVS 185

Query: 71  SIFSQRSHS 45
           S+ + ++HS
Sbjct: 186 SVSADQNHS 194


>SB_41511| Best HMM Match : SAP (HMM E-Value=2.7e-08)
          Length = 993

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = -2

Query: 251 GTLETTVSRIILEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVNSDFRHDYGK 72
           G+L  T  +I L K   +    + ++       ++   +E Q  +    +NS+FRHD   
Sbjct: 88  GSLNKTDLKIELGKRKLLTSGLKSVLVDRLKSYILEHESESQRGNDISRLNSNFRHDQVS 147

Query: 71  SIFSQRSHS 45
           S+ + ++HS
Sbjct: 148 SVSADQNHS 156


>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
          Length = 1060

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 390 DKASAHLVGGAKKVIISAP--SADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKV 563
           D+ S H V  A  V    P  +A+  +FV    +  YDP+  + ++ S   + LAP + V
Sbjct: 20  DRISKHGVQSAPAVFGQRPVSNANGTLFVRRFQMFRYDPNIAITTHGSSKKSGLAPASSV 79


>SB_51401| Best HMM Match : PseudoU_synth_1 (HMM E-Value=2e-28)
          Length = 503

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 96  GINGFGRIGRLVLRASIDKGADVVAINDPFIGLD 197
           G++ FG++  L +R ++DKG  V+   +  +G D
Sbjct: 137 GVSAFGQVISLNVRTNLDKGPGVILRQESSVGRD 170


>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
          Length = 829

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -2

Query: 329 NSMGIPLREHSYLLSVYDEV-SIYGLNGTLETTVSRIILEKVDHVVKTNERIIDSNNIGT 153
           N+M     E  Y +  YD V +I G +  L+TT     LEKV    +   R+I +N    
Sbjct: 662 NAMDFEYHEDHYEVVNYDLVINIPGQDSVLDTTNFSDFLEKVLSFAEAEGRVIRNNEFAG 721

Query: 152 LIN 144
           + N
Sbjct: 722 MSN 724


>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 48  VTSLRKYTLTIIMSKIGINGFGRIGRLVLRASIDKGADVVAINDPFIGLD 197
           + S  K   T++  + G     R  ++ L  ++   AD++ ++DP I LD
Sbjct: 213 LASFPKRDSTVVGDRCGTLSESRRAKINLARAVYSDADILLLDDPLISLD 262


>SB_41509| Best HMM Match : Exo_endo_phos (HMM E-Value=4.7e-05)
          Length = 670

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 149 INRSTEHQATDATKTVNSDFRHDYGKSIFSQRSHS 45
           +   +E Q  +    +NS+FRHD   S+ + ++HS
Sbjct: 10  LEHESESQRGNNISRLNSNFRHDQVSSVSADQNHS 44


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -1

Query: 474 QLQTWEHQ-HLVRR*LLSWLH-PPSEQKLYQWL*THRLIQQRIQHQPDPME*HGDP 313
           QLQ  + Q  L+RR L    H    +Q+L Q    +  + Q  QHQ DP   HG P
Sbjct: 190 QLQQQQQQIELLRRQLEEQQHINQQQQQLLQRAPENEPLVQPQQHQQDPSSFHGTP 245


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 431 NHLRTKC*CSHVCSWCQPG 487
           +HLR+KC  + +CS CQ G
Sbjct: 683 DHLRSKCPSTRLCSKCQSG 701


>SB_46976| Best HMM Match : PAN (HMM E-Value=6.9e-05)
          Length = 699

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 195 DYMVYLFQYDSTHGRFKGTVEAVDGHLVVNGKKIAV 302
           DY+ + ++  +   R+ G     +GH V++GK I+V
Sbjct: 659 DYLSHYYRTSALDNRYSGVSFKENGHKVMDGKLISV 694


>SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1266

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 48  VTSLRKYTLTIIMSK-IGINGFGRIGRLVLRASIDKGADVVAINDPFIGLDYMV 206
           V  L K  L++I  + + ++G G+  RL L  ++  GAD+  ++DP   +D  V
Sbjct: 536 VKRLPKGDLSMIGQRGVSLSG-GQRSRLSLARAVYSGADIFLLDDPLSAVDTQV 588


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,000
Number of Sequences: 59808
Number of extensions: 422463
Number of successful extensions: 1166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)