Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_M01
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    34   0.014
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    30   0.23 
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    28   0.92 
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   1.6  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    27   2.1  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   2.1  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    27   2.8  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    27   2.8  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    27   2.8  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   4.9  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    26   4.9  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    26   4.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.5  
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ...    25   8.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.6  

>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 1/121 (0%)
 Frame = +3

Query: 144 DESKDALYHSASSDTADDVARELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNLP 323
           +E  DAL      DTA  V  EL    N    D   + + V  LDN+       E  +  
Sbjct: 262 EEQLDAL-RKKDKDTAASVLAELFGSENTEEIDTVSKTSGVLELDNDSTNNFQKEGLDEQ 320

Query: 324 D-LTEEQSSSIDESTRRDEFWSEQLSVENLNYLNRILCLDQEGVDGHSLESEWEASGENC 500
           D L +E+S  ID     + F  E+ +V N++ L  +   + +     SL       GE  
Sbjct: 321 DNLQKEESVHIDVPAEFEAF-DERTAVVNVDNLKEMFSSNAQDTSKFSLFGNENGVGEES 379

Query: 501 E 503
           E
Sbjct: 380 E 380


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = -2

Query: 459 ARRHPPGPNTVSGSDSSNSQXXXXXXXXXXXXXXRLSTTIAPRSDPVNYPSLALTLP*FR 280
           AR H    ++ S S +S+                 L+T I P +     P+L  +     
Sbjct: 22  ARSHSSSSSSTSKSSASHHSSINSTSATSVYDFSSLTTPIVPTNGVAQEPTLYESSRGLS 81

Query: 279 CPDYRRRSLPD 247
           CP Y+ R++ +
Sbjct: 82  CPGYQARNISE 92


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
 Frame = +3

Query: 12  KHDVRRPSLHQSLIVTDNAQTASNGDPPDRYIPKSHSTHNFNHVDESKDALYHS-ASSDT 188
           KH   + SL +S    D+ + +  G PP++    S ++ + +  DES  +   S +SS+ 
Sbjct: 68  KHKKTKESLEKSN--DDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSED 125

Query: 189 ADDVARELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSIDESTR 368
            D  +     ++     D    ++  D+      E     + +    +E  S   D S+ 
Sbjct: 126 NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSS 185

Query: 369 RDEFWSEQLSVEN 407
             +  SE  S ++
Sbjct: 186 SSDSESESSSEDS 198


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 6/114 (5%)
 Frame = +3

Query: 21  VRRPSLHQSLIVTDNAQTASNGDPPDRYIPKSHSTHNFNHVDESKDALYHSASSDTADDV 200
           V++P L+  L       T S  D        S S  + + +  + D+     SSDTA   
Sbjct: 244 VQQPELNSLLTSQSKNSTPSESDSSSS--ESSSSVSDSSDLSSTSDSSSGDESSDTARQS 301

Query: 201 ARELIYDTNIRHNDRYPEANDVD------NLDNEIMEALTLETGNLPDLTEEQS 344
           + + I   N+  +     AN+          +NE +E+    + + P   EE S
Sbjct: 302 SSDTISSNNVSVSVSLNTANEFSFPQGTFKAENEAVESEVAPSSSTPPTVEEIS 355


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +3

Query: 288 MEALTLETGNLPD-----LTEEQSSSIDESTRRDEFWSE 389
           ++ LT  T +  D     L EE S+SID+  R   FW+E
Sbjct: 290 LQPLTFSTASYDDWSPHILPEETSTSIDDDLRYPIFWTE 328


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 54  VTDNAQTASNGDPPDRYIPKSHSTH-NFNHVDESKDALYHSASSDTADDVAREL 212
           V D  Q   N DP  R++P   S H   NH  +   +L  +   D   DV  E+
Sbjct: 52  VADELQRRINNDPKVRFLPPVDSYHPKRNHARQKLSSLAPTRLRDLCMDVFFEV 105


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 237 NDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSI 353
           N  YP  + +D L  +    + LE G LP+   E  S++
Sbjct: 3   NKDYPLRSSMDELSTKNDNEIDLEKGPLPEYNSEDGSTL 41


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +3

Query: 237 NDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDEFWS-EQLSVENLN 413
           N  YP  + +D L  +    + LE G LP+   E  S++   +        +Q+   N N
Sbjct: 3   NKYYPLRSSMDELSAKNDNEIDLEKGPLPEYNSEDGSTLPPYSENINLKDPKQMGANNPN 62

Query: 414 YLN 422
             N
Sbjct: 63  LFN 65


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +3

Query: 237 NDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDEFWS-EQLSVENLN 413
           N  YP  + +D L  +    + LE G LP+   E  S++   +        +Q+   N N
Sbjct: 3   NKYYPLRSSMDELSAKNDNEIDLEKGPLPEYNSEDGSTLPPYSENINLKDPKQMGANNPN 62

Query: 414 YLN 422
             N
Sbjct: 63  LFN 65


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 267 DNLDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDEFWSEQLSVENL 410
           ++LDN+  EAL      L DL E Q  + DES    E  +E+ ++ NL
Sbjct: 42  EDLDNK-EEALDFSEDELSDLDENQFENFDESKIGRE--AEEPTIYNL 86


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 273 LDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDEFWSEQLSVENLNYLNRIL 431
           LDN+  E++T     +    E+  +SID ST + E  +E L    ++ L+R +
Sbjct: 654 LDNQFGESMTKTEKGVEIKFEKYEASIDFSTMKVECSNEALRSRVVHVLSRAI 706


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 78  SNGDPPDRYIPKSHSTHNFNHVDESK 155
           S+G  PD  +P S S HN  H+D  K
Sbjct: 197 SSGPAPDD-MPSSASNHNQKHLDSDK 221


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 207  ELIYDTNIRHNDRYPEANDVDNLDNE 284
            E +  TN+ H+  Y  A D++N++NE
Sbjct: 2149 EAVAATNVFHHLSYQGAIDLENIENE 2174


>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 324 DLTEEQSSSIDESTRRDEFWSEQLSVE 404
           DLT+ +   + +   +D+FW E+ S E
Sbjct: 126 DLTQLKLFRLPDFNNKDQFWKEEWSTE 152


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 129 NFNHVDESKDALYHSASSDTADDVARELIYDTNIRHND-RYPEANDVDNLDN 281
           + N  + S + +     +D  ++     +Y+ N+R  D   P   D D  D+
Sbjct: 6   DINQSESSAETITQGRRADRPEETPSSSVYEQNLRFGDFLMPTVGDADATDS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,373
Number of Sequences: 5004
Number of extensions: 44285
Number of successful extensions: 177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)