Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_M01
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 33 0.18
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 30 1.2
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 30 1.6
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026 30 1.6
11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584 29 2.9
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 29 2.9
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 29 2.9
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 2.9
07_01_0914 - 7693305-7693513,7693613-7694111,7694716-7696316,769... 29 3.8
04_04_1376 + 33058306-33059763,33059851-33059991,33060594-330606... 29 3.8
01_05_0654 + 23965868-23967718 28 5.0
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 6.6
05_04_0126 + 18252594-18256922 27 8.7
02_03_0034 - 14142518-14142923,14142935-14143269,14143976-141440... 27 8.7
01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360 27 8.7
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 33.1 bits (72), Expect = 0.18
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +3
Query: 84 GDPPDRYIPKSHSTHNFNHVDESKDALYHSASSDTADDVARELIYDTNIRHNDRYPEAND 263
G+ PD + K V ++AL S SD REL +D+ D YP+ +
Sbjct: 242 GEAPDEQLTKEQEDKKKETVQSVREALV-SKKSDF-----RELEHDSE---TDDYPDDEN 292
Query: 264 VDNLDNEIMEALTLETGNLPDL-TEEQSSSIDESTRRDE 377
++ DN + + + L D+ + E S D++ R+D+
Sbjct: 293 EEDFDNRMRSQILRKRRELGDIRSSETSKKTDKAHRKDK 331
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 270 NLDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDEFWSEQLSVENLNYLNR 425
NLD AL+L N P LT +D++T E W+ L + L+++ +
Sbjct: 407 NLDVHHDGALSLNGSNPPSLTSMSEDGVDDATSCAESWANAL-ISELSHIKK 457
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 21 VRRPSLHQSLIVTDNAQTASNGDPPDRYIPKSHSTHNFNHVDES--KDALYHSASSDTAD 194
V RP + + N + +G P K HS+HN N VD+S K S D+ D
Sbjct: 64 VSRPLQQRPQSSSPNPRPLGSGQPNSS---KEHSSHNSNSVDKSKLKRPFVEDKSDDSED 120
Query: 195 D 197
D
Sbjct: 121 D 121
>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
Length = 961
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = -2
Query: 597 SSTGPGPRTPPA*VQGRDKLESSST*V---PSVGARNSRRTLPIPILNYARRHPP---GP 436
S++GP P PPA D SSST SV A++ R TLP P+L P GP
Sbjct: 214 SNSGPLPLHPPA-ATPADGTSSSSTPTLSKKSVKAKSGRDTLPEPLLRAVGLPEPRHGGP 272
Query: 435 NTVS 424
+ V+
Sbjct: 273 HMVT 276
>11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584
Length = 607
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Frame = +3
Query: 375 EFWSEQLSVENLN-----YLNRILCLDQEGVDGHSLESEWEASGENCEHLHLVLKYWNFL 539
E WS QL NL L ++ L + V G+ L E AS + ++ WN L
Sbjct: 352 ELWSIQLYSNNLTGELPPELGKLTGLRELDVSGNKLSGEIPASLAVLRNFEVIHLQWNNL 411
Query: 540 VCPYPELTRAVSWGQVR 590
P P +WG++R
Sbjct: 412 SGPIP-----AAWGELR 423
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 405 NLNYLNRILCLDQEGVDGHSLESEWEASGENC--EHLHLVLK 524
+L Y N+I CLD D LE+ W + ENC + LH +L+
Sbjct: 531 HLCYQNKIGCLDMNLGDPDVLETIWIKALENCTSKPLHSLLR 572
>03_05_0725 + 27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 171 SASSDTADDVARELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNL------PDLT 332
+A +D A+DV + + +HN E +++D + + I AL L PD
Sbjct: 836 AAENDRAEDVTTDEASVCDNKHNSEDEEESELDEIQSSIDSALDQAFFCLYGLKINPDSC 895
Query: 333 EEQSSSIDESTRRDEFWSEQLSVENLNYL 419
E ++ ++T R ++ +++ + Y+
Sbjct: 896 SEDDLAVHKNTSRGDYQTKEQCADVFQYV 924
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.1 bits (62), Expect = 2.9
Identities = 27/118 (22%), Positives = 45/118 (38%)
Frame = +3
Query: 156 DALYHSASSDTADDVARELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNLPDLTE 335
D L S TA L+ T + + ++ ++++ +L + N P
Sbjct: 1755 DPLDSETQSYTAAHKPAALLVSTEVETQTDQSSMLERQSISVPLVQS-SLSSQN-PPAEA 1812
Query: 336 EQSSSIDESTRRDEFWSEQLSVENLNYLNRILCLDQEGVDGHSLESEWEASGENCEHL 509
E +S++ T RD Q S L + + D + H LE+ GE C HL
Sbjct: 1813 EPASTLSRETARDVQPERQQSASVLETSLQRMHPDDDSQTKHQLETVLSQRGETCGHL 1870
>07_01_0914 -
7693305-7693513,7693613-7694111,7694716-7696316,
7696509-7696530
Length = 776
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 309 TGNLPDLTEEQSSSIDESTRRDEFWSEQLSVENLNYLNRILC 434
TGNLP+ + QS++ E+ + D+F S+ S N+ +++C
Sbjct: 38 TGNLPE--DAQSTNNGEAKKTDDFMSQVASCLNIMRGQQLIC 77
>04_04_1376 +
33058306-33059763,33059851-33059991,33060594-33060644,
33061094-33061171,33061245-33061388,33061871-33062002
Length = 667
Score = 28.7 bits (61), Expect = 3.8
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Frame = +3
Query: 192 DDVARELIYDTNIRHNDRYPEAN-DVDNLDNEIMEALTLETGNL-PDLTEEQSSSIDEST 365
++V E I+ + +DR+ + D+DN+ E + AL GN+ L+EE+ + + +
Sbjct: 545 ENVRFESIFYGGVDIHDRHRDMRLDIDNMSYEELLALEERIGNVSTGLSEEEVTKLLKQ- 603
Query: 366 RRDEFWSEQLSVENLNYLNRILCLDQEG-VDGHSL 467
R+ W + SVE C+ QE VDG L
Sbjct: 604 RKFSSWRLEASVE-----EEPCCICQEEYVDGDDL 633
>01_05_0654 + 23965868-23967718
Length = 616
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 483 LPIPILNYARRHPPGPNTVSGSDSSN 406
LP+P+ A RHPP P+ S S S++
Sbjct: 4 LPLPLPLPATRHPPKPHEASASASAS 29
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 237 NDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSSSIDESTRRDEFWSEQLSVENLN- 413
NDR + + NE E GN+ D EEQ + ++W+E+ E+ N
Sbjct: 73 NDRTKTSENEGTNVNENKRTNVNELGNMADRDEEQILYDTIAEGSSQYWNEEEGNEDPNQ 132
Query: 414 YLN 422
YLN
Sbjct: 133 YLN 135
>05_04_0126 + 18252594-18256922
Length = 1442
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/95 (23%), Positives = 46/95 (48%)
Frame = +3
Query: 168 HSASSDTADDVARELIYDTNIRHNDRYPEANDVDNLDNEIMEALTLETGNLPDLTEEQSS 347
H ADD R + + +D + + N+D++I E + + G + TEE +
Sbjct: 286 HGTGQGEADDEKRRKAFQDKLNTHDEIWKEIEKMNIDDKI-EEVKRKIGEVSGTTEEVKN 344
Query: 348 SIDESTRRDEFWSEQLSVENLNYLNRILCLDQEGV 452
+ E T+ + ++ +S+ L+ R++ L+ EG+
Sbjct: 345 NKIEGTKYLKATTD-ISIGMLHQALRLM-LNSEGL 377
>02_03_0034 -
14142518-14142923,14142935-14143269,14143976-14144068,
14144704-14145674,14145714-14145812,14146011-14146488,
14146717-14146929
Length = 864
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = -3
Query: 188 RVRTSAVIQRVFRFVDVIEVMRRMALRYISIRWVTIARCLRVISNNEALV 39
R+R +V ++ RFV+VI+ + +I+ T AR L+ I NN+ L+
Sbjct: 303 RMRKPSVDEQFARFVEVIQKIHINVSLLDAIQVPTYARYLKDILNNKRLL 352
>01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360
Length = 425
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 134 EVMRRMALRYISIRWVTIARCLRVISNNEALVQRWTSHI 18
EV+++M + + +W TIA+ L + +RWT+H+
Sbjct: 102 EVLKQMVILHGDRKWATIAKSLPGRIGKQCR-ERWTNHL 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,857
Number of Sequences: 37544
Number of extensions: 307783
Number of successful extensions: 1129
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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